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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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HN.5*(FL.1.5.1.5*) x FY.5.1.1+S:R683Q recombinant (3 seqs in St. Petersburg, Russia) #1461

Closed HynnSpylor closed 4 months ago

HynnSpylor commented 5 months ago

Description: Recombinant of: HN.5 (FL.1.5.1.5, XBB.1.9.1.1.5.1.5) and FY.5.1.1 (XBB.1.22.1.5.1.1) +S:R683Q and N:T49I branch Breakpoint: nuc:6415-11956, Before = HN.5, After = FY.5.1.1*) Earliest sequence: 2024-01-26 (St. Petersburg, Russia-EPI_ISL_18105656) Most recent sequence: 2024-02-05 (St. Petersburg, Russia-EPI_ISL_18284946) Countries circulating: Russia (3) GISAID Nucleotide Query: G3242A, A6415C, A22161G, G22302A

Usher Tree: 联想截图_20240323160805

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2c1e4_c064d0.json It is also interesting that the FY.5.1.1 part gets S:R683Q, which destroys FCS and also popular in some JN.1 branches recently.

Genomes: EPI_ISL_18973797, EPI_ISL_18973946, EPI_ISL_18974024

aviczhl2 commented 4 months ago

New Russian batch doesn't include this.