Closed NkRMnZr closed 1 year ago
Defining mutations: (On top XBB.1.5's T17124C > T23018C branch) > G21668A(S:V36I) > C6196T > C20823T > C25292T(S:L1244F) > Query: G21668A, C25292T [53 seqs] Earliest seq: 2023-02-18 (EPI_ISL_17141723, Michigan or EPI_ISL_17075504, Japan) Latest seq: 2023-05-20 (EPI_ISL_17762007, South Korea) Sampled in Countries: South Korea (47), Japan (2), Australia (2, WA, NSW), China (1, Shanghai), USA (1, Michigan)
UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_14fc4_ebcac0.json?c=gt-S_1244&f_userOrOld=uploaded%20sample&showBranchLabels=all overview from XBB.1.5 polytomy details
Trivia:
Defining mutations: (On top of XBB.1.9.2's A27507C) > G2659T(ORF1a:K798N) > C8752T > T6688C > A21137G(ORF1a:K2557R) > C25292T(S:L1244F), C29370T(N:T366I) > Query: G2659T, C25292T [24 seqs] Earliest seq: 2023-03-13 (EPI_ISL_17346273, France) Latest seq: 2023-05-18 (EPI_ISL_17711713, Spain) Sampled in Countries: France (22), Spain (1), Switzerland (1)
UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice2_genome_5753_eb4700.json?c=gt-S_1244&f_userOrOld=uploaded%20sample&showBranchLabels=all overview from XBB.1.9.2 polytomy details
They seem slow closing this for now. Ping me if they will be back.
Branch 2 is also detected in Algeria. (in 2023 edited)
Branch 1:
Defining mutations: (On top XBB.1.5's T17124C > T23018C branch) > G21668A(S:V36I) > C6196T > C20823T > C25292T(S:L1244F) > Query: G21668A, C25292T [53 seqs] Earliest seq: 2023-02-18 (EPI_ISL_17141723, Michigan or EPI_ISL_17075504, Japan) Latest seq: 2023-05-20 (EPI_ISL_17762007, South Korea) Sampled in Countries: South Korea (47), Japan (2), Australia (2, WA, NSW), China (1, Shanghai), USA (1, Michigan)
Genomes:
EPI_ISL_17075504, EPI_ISL_17141723, EPI_ISL_17150370, EPI_ISL_17213370, EPI_ISL_17294885, EPI_ISL_17375152, EPI_ISL_17473616, EPI_ISL_17473732, EPI_ISL_17511403, EPI_ISL_17538436, EPI_ISL_17538796, EPI_ISL_17538957, EPI_ISL_17538991, EPI_ISL_17539050, EPI_ISL_17539183, EPI_ISL_17539339, EPI_ISL_17561478, EPI_ISL_17563233, EPI_ISL_17563419, EPI_ISL_17563954, EPI_ISL_17563999, EPI_ISL_17564130, EPI_ISL_17604230, EPI_ISL_17604288, EPI_ISL_17604516, EPI_ISL_17604651, EPI_ISL_17604943, EPI_ISL_17605197, EPI_ISL_17646990, EPI_ISL_17647044, EPI_ISL_17647162, EPI_ISL_17647200, EPI_ISL_17647328, EPI_ISL_17647370, EPI_ISL_17647581, EPI_ISL_17648578, EPI_ISL_17677762, EPI_ISL_17690634, EPI_ISL_17691123, EPI_ISL_17696788, EPI_ISL_17723325, EPI_ISL_17723462, EPI_ISL_17723648, EPI_ISL_17723969, EPI_ISL_17724002, EPI_ISL_17724130, EPI_ISL_17730308, EPI_ISL_17730398, EPI_ISL_17730399, EPI_ISL_17730608, EPI_ISL_17730756, EPI_ISL_17741113, EPI_ISL_17762007UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_14fc4_ebcac0.json?c=gt-S_1244&f_userOrOld=uploaded%20sample&showBranchLabels=all overview from XBB.1.5 polytomy
details
![XBB 1 5 on T17124C + S_L1244F Detailed](https://github.com/sars-cov-2-variants/lineage-proposals/assets/125747944/f6a56bed-2ab7-43bf-8b23-a1014b073eb3)
Trivia:
Branch 2:
Defining mutations: (On top of XBB.1.9.2's A27507C) > G2659T(ORF1a:K798N) > C8752T > T6688C > A21137G(ORF1a:K2557R) > C25292T(S:L1244F), C29370T(N:T366I) > Query: G2659T, C25292T [24 seqs] Earliest seq: 2023-03-13 (EPI_ISL_17346273, France) Latest seq: 2023-05-18 (EPI_ISL_17711713, Spain) Sampled in Countries: France (22), Spain (1), Switzerland (1)
Genomes:
EPI_ISL_17346273, EPI_ISL_17422108, EPI_ISL_17480618, EPI_ISL_17490171, EPI_ISL_17490173, EPI_ISL_17522958, EPI_ISL_17564407, EPI_ISL_17564797, EPI_ISL_17587080, EPI_ISL_17615144, EPI_ISL_17615218, EPI_ISL_17657541, EPI_ISL_17657576, EPI_ISL_17670794, EPI_ISL_17670872, EPI_ISL_17673709, EPI_ISL_17711713, EPI_ISL_17715825, EPI_ISL_17715842, EPI_ISL_17731645, EPI_ISL_17731654, EPI_ISL_17743340, EPI_ISL_17743385, EPI_ISL_17764256,UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice2_genome_5753_eb4700.json?c=gt-S_1244&f_userOrOld=uploaded%20sample&showBranchLabels=all overview from XBB.1.9.2 polytomy
details
![XBB 1 9 2+S_L1244F_Detail](https://github.com/sars-cov-2-variants/lineage-proposals/assets/125747944/576765fc-f093-4d34-b602-5998ff4e199b)
Trivia: