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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Japanese saltation(34 nuc,19 aa, 6 Spike) of XBB.1.16(4 seqs) #1470

Closed aviczhl2 closed 5 months ago

aviczhl2 commented 5 months ago

First spotted by @ryhisner

XBB.1.16+

T422C, T3771C, G11609A, T14460C, T15993C, T16380C, A18135G, G18443A, A19459G, G21956C, A24696G, T24796C, G24954A, G25352A, A25905G, A27617T, G28839A, A28993G G174T, C934T, G4133A, A4209G, C6548T, G12322A, C13458T, G18636A, G19117T, A22215G, C23123T, T23455C, C26681T, C28153T, G28447A(rev), G29348T

ORF1a:V1169A, V3782I, V1290I, K1315R, S4398L Orf1b: R1659K, I1998V, A1884S S :E132Q, K1045R, G1131E, V1264M, Q218R, P521S ORF7a:Y75F ORF8:T87I N :R189H, A359S Orf9b:S55N(rev)

GISAID query: G174T,T422C No. of seqs: 4(Japan)

EPI_ISL_19005468,19005470,19005472,19005481, 2024.2.10-2.20 usher

image

aviczhl2 commented 5 months ago

No further updates