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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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JN.1+Orf1b:K82R, Orf1a:A2529S, D1513E+S:S680P(23 seqs, 5 countries, 4 with S:M153I) #1513

Closed xz-keg closed 5 months ago

xz-keg commented 6 months ago

JN.1+A13712G(Orf1b:K82R)+G7850T(Orf1a:A2529S)+T4804G(Orf1a:D1513E)+T23600C(S:S680P)

GISAID query: G7850T, T4804G, T23600C No. of seqs: 20(South Korea 1 China 6 USA 1 Brunei 9 Japan 3)

First: EPI_ISL_18788923, Brunei, 2023-12-8 Latest: EPI_ISL_19045944, China, 2024-3-23

GISAID query for S:M153I branch: G22021C, T23600C, T4804G (4 seqs)

usher

image

FedeGueli commented 6 months ago

Orf1b:K82R, Orf1a:A2529S both reminds me of Delta, 2529V was AY.4 while Orf1b:K82R was in a sibling undesignated lineage of AY.41 that gave birth to a very bad south east europe wave.

(likely it seems slow)

xz-keg commented 5 months ago

No new seqs

xz-keg commented 4 months ago

JN.1+Orf1b:K82R, Orf1a:A2529S, D1513E designated JN.1.63 and JN.1.63.1 via https://github.com/cov-lineages/pango-designation/commit/b72e69f927508b63fac9c696995c88fd5b5cc88d