JN.1+S:S27L (approx. 204 sequences, 13 countries, mainly in China)

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JN.1> A29086T> C21642T(S:S27L) C21642T makes S:del24-26, A27S become del25-27. As the mutation is next to deletion, it is analyzed as the moving of the deleted section, and could not be analyzed with Usher. Query: -T21633C, del21635_21643, A29086T China 150(1 from Japan, 1 from Ethiopia, 1 from Macao SAR), Japan 4, Korea 4, Thailand 1, Finland 1, Russia 1, Switzerland 3, UK 1, Canada 4, US 26(1 from Hong Kong SAR, China), Australia 6, Malaysia 2

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some sequences are misplaced on JN.1.32(S:T572I) branch. They should be JN.1> S:S27L> S:T572I.

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21634-21642N=21635-21643N=del21635-21643=C21642T

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Sequences with 21634-21642N or 21635-21643N instead del21635-21643: EPI_ISL_18961249, EPI_ISL_18973878, EPI_ISL_18973899, EPI_ISL_18982953, EPI_ISL_19025103, EPI_ISL_19025135, EPI_ISL_19028387, EPI_ISL_19040230, EPI_ISL_19040241, EPI_ISL_19040253, EPI_ISL_19041015, EPI_ISL_19061149, EPI_ISL_19061150, EPI_ISL_19061214, EPI_ISL_19086922, EPI_ISL_19150429, EPI_ISL_19150490, EPI_ISL_19150511

CN16 RU2

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Henan/PYCDC-LG0214/2024|EPI_ISL_19028479|2024-03-12 29086 drop out other sequences lack evidence to prove A29086T

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some sequences matching the query -T21633C, del21635_21643, A29086T don't belong to this branch.

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Some already known subbranches: G28423A(28), T692G(23), C23277T(S:T572I, 11)

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covSPECTRUM query: nextcladePangoLineage:JN.1 & A29086T & [1-of: T21633T, G21642T]