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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Jn.1.52 + FLiRT( placed as JN.1.16.1+Orf1a:K3353R ) with S:F59S in Spain, Sweden (14) #1579

Closed FedeGueli closed 1 day ago

FedeGueli commented 1 month ago

Defining : JN.1.16.1 > Orf1a:K3353R (A10323G) > ORF1a:S2246L (C7002T), S:F59S (T21738C) Query: A10323G,C7002T,T21738C Samples: 7 Mostly Spain First sample collected on 2024-04-01 from Israel IDs: EPI_ISL_19147469, EPI_ISL_19162087, EPI_ISL_19162090-19162091, EPI_ISL_19162094, EPI_ISL_19162099

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Screenshot 2024-05-26 alle 01 54 43
aviczhl2 commented 1 month ago

Shall be JN.1.52+FLiRT+S:F59S?

FedeGueli commented 1 month ago

Shall be JN.1.52+FLiRT+S:F59S?

where is it plavced now? Orf1a:K3353R is very homoplasic so unsure

aviczhl2 commented 1 month ago

Shall be JN.1.52+FLiRT+S:F59S?

where is it plavced now? Orf1a:K3353R is very homoplasic so unsure

Is it really homoplastic, or just misplacement like G2782T? Needs investigation.

aviczhl2 commented 1 month ago

Given the extreme convergence of FLiRT it shall be more possibly sub-branch of JN.1.52?

FedeGueli commented 4 weeks ago

maybe just a cluster

FedeGueli commented 1 day ago

14 now, but just two from June worth closing it