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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.2.3 + S:S31del branch with N:H145Y + S:K679R + ORF1a:T2016K (101 in 7 countries) #1603

Closed Fearuncle closed 3 weeks ago

Fearuncle commented 3 months ago

image image tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_245b4_346f40.json?c=gt-S_679&gmax=25384&gmin=21563&label=id:node_7001206

First Seq: 2024-05-11 Most Recent: 2024-05-28

Gisaid Query: C6312A, T19449C, A23598G, C28706T

EPI_ISL_19178464 EPI_ISL_19165530 EPI_ISL_19153543 EPI_ISL_19178431 EPI_ISL_19178477 EPI_ISL_19178476 EPI_ISL_19165521 EPI_ISL_19178378 EPI_ISL_19165460 PP832030.1 PP832067.1 PP857924.1

Mydtlwn commented 2 months ago

Labels KP.3?

Mydtlwn commented 2 months ago

The definition mutation of KP.2.3 has been adjusted to include the S: S31del mutation!

FedeGueli commented 2 months ago

The definition mutation of KP.2.3 has been adjusted to include the S: S31del mutation!

a really i didnt know.

FedeGueli commented 2 months ago

one very rare double mutation popped up in this lineage: S:G72W, S:F159V : Query: G21776T, G22037T,T3565C

It is from a GBW sample so it should be prevalent somewhere

Screenshot 2024-06-24 alle 13 25 50

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice4_genome_test_5ebe_943db0.json?label=id:node_7007995

FedeGueli commented 4 weeks ago

101 from 7 countries please propose it @Fearuncle

DailyCovidCases commented 3 weeks ago

Please propose it

FedeGueli commented 3 weeks ago

Please propose it

green light to be proposed on the main page could be given only by moderators of this repo.