KP.1 with S:V622A (27 seqs, 4 countries)

[NkRMnZr]

Defining Mutations: KP.1 > C10015T, T23427C(S:V622A) Query: C7113T, C10015T, T23427C Earliest seq: 2024-02-19 (EPI_ISL_19032869, Maharashtra, India) Latest seq: 2024-05-31 (EPI_ISL_19198419, Scotland, UK) Sampled Countries: UK (21: 20/SC, 1/EN); India (2: MH); USA (2: GBW samples with travel history to: UAE); Switzerland (1)

Genomes:

for `lineages.csv` commit: ``` England/CLIMB-CM7YKGAY/2024 India/MH_BJCOG_6500/2024 India/MH_BJCOG_6514/2024 Scotland/CLIMB-CM7Y8N3U/2024 Scotland/CLIMB-CM7Y8O8Q/2024 Scotland/CLIMB-CM7Y8Z66/2024 Scotland/CLIMB-CM7YE7DI/2024 Scotland/CLIMB-CM7YEQY8/2024 Scotland/CLIMB-CM7YF4NQ/2024 Scotland/CLIMB-CM7YFAHS/2024 Scotland/CLIMB-CM7YFFAK/2024 Scotland/CLIMB-CM7YFJOZ/2024 Scotland/CLIMB-CM7YFQ3G/2024 Scotland/CLIMB-CM7YFZXP/2024 Scotland/CLIMB-CM7YGHSO/2024 Scotland/CLIMB-CM7YGMSR/2024 Scotland/CLIMB-CM7YGNKA/2024 Scotland/CLIMB-CM7YJCAY/2024 Scotland/CLIMB-CM7YJDJ5/2024 Scotland/CLIMB-CM7YJTBD/2024 Scotland/CLIMB-CM7YKDW1/2024 Scotland/CLIMB-CM7YRAT7/2024 Scotland/CLIMB-CM7YRJWD/2024 Switzerland/BS-UHB-USB_2024_05_28_9f8a7d67/2024 USA/NJ-GBW-GKISBBBB88886/2024 USA/NJ-GBW-GKPLAAAA11546/2024 ``` _epi_isl_ accessions: `EPI_ISL_19032855, EPI_ISL_19032869, EPI_ISL_19060019, EPI_ISL_19060067, EPI_ISL_19096275, EPI_ISL_19096279, EPI_ISL_19096303, EPI_ISL_19130886, EPI_ISL_19130912, EPI_ISL_19133088, EPI_ISL_19147140, EPI_ISL_19151356, EPI_ISL_19165324, EPI_ISL_19165329, EPI_ISL_19165337, EPI_ISL_19165340, EPI_ISL_19177099, EPI_ISL_19177103, EPI_ISL_19177106, EPI_ISL_19177109, EPI_ISL_19185687, EPI_ISL_19187860, EPI_ISL_19187873, EPI_ISL_19198093, EPI_ISL_19198375, EPI_ISL_19198419`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_5b59_16fa80.json?label=id:node_7002499

Trivia:

• This may not be a fast one, which took several months to be detected again by other countries (mainly UK), the interesting part is V622A on top of P621S
• One of the seqs, namely USA/NJ-GBW-GKPLAAAA11546/2024|EPI_ISL_19060019|2024-04-11 also have something interesting in nsp3

[FedeGueli]

622A also in #1644 now