sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.3.3+S:T547K, Orf3a:F87S(12 seqs, 6 countries) #1651

Closed aviczhl2 closed 1 day ago

aviczhl2 commented 5 days ago

KP.3.3+G15543T, C23202A, T25652C, C25803T(S:T547K, Orf3a:F87S)

GISAID query: C23202A, C25006T, G28884C No. of seqs: 7(USA 3(2 from Japan) Singapore 1 Japan 2 Australia 1)

First: EPI_ISL_19181375, Singapore, 2024-5-28 Latest: EPI_ISL_19212289, USA, 2024-6-16

usher image

FedeGueli commented 5 days ago

the Orf10:S23F is homoplasy no trace of recomb?

aviczhl2 commented 5 days ago

the Orf10:S23F is homoplasy no trace of recomb?

Maybe. But hard to prove or disprove. EG.5.1 is very few now and it doesn't have 28958 reverted so likely just homoplasy.

FedeGueli commented 2 days ago

Taiwan, Malaysia , California and Japan via GBW this jumped to 12

4/64 after June 10 in Taiwan

FedeGueli commented 1 day ago

Designated KP.3.3.1 via https://github.com/cov-lineages/pango-designation/commit/90185bfff48dcfdb41ce67fbd123345768212a93