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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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JN.1.32 (572I) sublineage with S:T22N and S:N334K (13 samples Canada) #1661

Closed FedeGueli closed 4 months ago

FedeGueli commented 4 months ago

Unlikely this could spread further but S: N334K caught my attention: it has been sampled less than 400x in the course of the pandemic and no lineage with it was greater than 80 sequences. Moreover it is worth tracking for a bit how T22N does in a non flirt backbone.

Defining mutations: JN.1.32 (S:T572I) >> > Orf7a:T28I (C27476T)> Orf1a:K1247R (A4005G) > A12928G > C26537T > S:T22N (C21627A) > T22219C, S:N334K (C22564A)

Query:C22564A, T22219C,C26537T

Samples: 10 First on 2024-02-25 (Yale)

Countries: 2 Canada, US

Tree:

Screenshot 2024-06-30 alle 15 35 43

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice5_genome_test_318ef_115630.json?c=gt-S_334&gmax=25384&gmin=21563&label=id:node_7177228

IDs:EPI_ISL_19027666, EPI_ISL_19178269-19178270, EPI_ISL_19178275, EPI_ISL_19178280-19178281, EPI_ISL_19178286, EPI_ISL_19194070, EPI_ISL_19217044, EPI_ISL_19217046

FedeGueli commented 4 months ago

slow

FedeGueli commented 4 months ago

dead