sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 2 forks source link

KP.2.2 + S:T22N (71, 13 countries likely emerged in Nepal) mostly with ORF1b:K2660R (60) #1662

Closed FedeGueli closed 1 month ago

FedeGueli commented 3 months ago

Defining mutations: KP.2.2 > T24364C > S:T22N (C21627A) >> ORF1b:K2660R (A21446G), NEW QUERY: T24364C ,C21627A ( OLD 2 : A21446G,C21627A (OLD 1 :T24364C ,A21446G,C21627A) Samples: 71 First sampled on 2024-05-13 in NJ and few days after that in Nepal. Country:Bhutan, US, France, Germany, China, India , Italy, Japan, Nepal, Singapore, Taiwan, Spain, UK Tree:

Screenshot 2024-08-25 alle 00 16 16

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_66a6f_a59210.json?label=id:node_7016742

IDs EPI_ISL_19175957, EPI_ISL_19195789, EPI_ISL_19195940, EPI_ISL_19196466, EPI_ISL_19196469, EPI_ISL_19196472, EPI_ISL_19215569, EPI_ISL_19215579, EPI_ISL_19215584, EPI_ISL_19221625, EPI_ISL_19227119, EPI_ISL_19227848, EPI_ISL_19262919, EPI_ISL_19263096, EPI_ISL_19266639, EPI_ISL_19268121, EPI_ISL_19273639, EPI_ISL_19273650, EPI_ISL_19273754, EPI_ISL_19279853, EPI_ISL_19280236, EPI_ISL_19281309, EPI_ISL_19284847, EPI_ISL_19286287, EPI_ISL_19288317, EPI_ISL_19288321, EPI_ISL_19289660, EPI_ISL_19289751, EPI_ISL_19298481, EPI_ISL_19298698, EPI_ISL_19300171, EPI_ISL_19306360, EPI_ISL_19308849, EPI_ISL_19309009, EPI_ISL_19309114, EPI_ISL_19310487, EPI_ISL_19311662, EPI_ISL_19311737, EPI_ISL_19311762, EPI_ISL_19315274, EPI_ISL_19317137, EPI_ISL_19318636, EPI_ISL_19318656, EPI_ISL_19323618, EPI_ISL_19326342, EPI_ISL_19328302, EPI_ISL_19328305, EPI_ISL_19328481, EPI_ISL_19328538, EPI_ISL_19329420, EPI_ISL_19329974, EPI_ISL_19333104, EPI_ISL_19338989, EPI_ISL_19339618, EPI_ISL_19340061, EPI_ISL_19340255, EPI_ISL_19341177, EPI_ISL_19341265-19341266, EPI_ISL_19346691, EPI_ISL_19346811, EPI_ISL_19346825, EPI_ISL_19346919, EPI_ISL_19347330, EPI_ISL_19349917, EPI_ISL_19350183, EPI_ISL_19350328, EPI_ISL_19350667, EPI_ISL_19351728, EPI_ISL_19351751, EPI_ISL_19353646

FedeGueli commented 3 months ago

new query finds 17 A21446G,C21627A

FedeGueli commented 2 months ago

too slow closing it

aviczhl2 commented 2 months ago

25 seqs, found by GBW from Qatar and France , as well as Singapore, Austria and Canada

FedeGueli commented 2 months ago

25 seqs, found by GBW from Qatar and France , as well as Singapore, Austria and Canada

Reopened thanks!

FedeGueli commented 2 months ago

27

FedeGueli commented 2 months ago

32 10 countries

Memorablea commented 1 month ago

@corneliusroemer

FedeGueli commented 1 month ago

56 and growing, some samples have acquired S:T478T rev too

FedeGueli commented 1 month ago

It seems being able to keep the pace of KP.3 at least.

FedeGueli commented 1 month ago

i m proposing it , Query has changed again