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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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LP.1 + S:R190S (19 , Dominican Rep., Puertorico) #1664

Open FedeGueli opened 2 weeks ago

FedeGueli commented 2 weeks ago

Just spotted this one while looking at the LP.1.1 tree, With LP.1.1 it shares the area where it is spreading in the Caribbean mayor islands. It has the convergent S:R190S resulting in a new N GLycan N188

LP.1 > T14508C > T18300A > S:R190S (G22132T)

Query: T14508C , T18300A ,G22132T Samples: 8 Countries: Dominican Republic ( 3 locally sampled 3 GBW) Puerto Rico (2) Tree:

Screenshot 2024-07-01 alle 07 03 33

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice8_genome_test_1041f_2361f0.json?label=id:node_7017476

IDs: EPI_ISL_19190680, EPI_ISL_19206074, EPI_ISL_19210377, EPI_ISL_19214194, EPI_ISL_19214200, EPI_ISL_19215679, EPI_ISL_19221154

Memorablea commented 1 week ago

14

FedeGueli commented 1 week ago

14

thx i see only ten, which query do you use?

FedeGueli commented 36 minutes ago

19 , mutliple US states, Canada and Rep.Dominicana