search

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 2 forks source link

KP.3.3 with S:A435S (10 Uk, Canada) #1673

Closed FedeGueli closed 1 week ago

FedeGueli commented 2 weeks ago

S:A435S seems quite convergent in the very few last weeks, i have spotted it in some samples from Pilgrims sequenced in Senegal, and @aviczhl2 today proposed a KP.4.1 branch with it in #1668 . Here i want to propose this small branch of KP.3.3 sampled first in England back in April , so likely not fast , but worth be sure checking it here.

Defining mutations: KP.3.3 > Orf1a:N4134T (A12666C)> S:A435S (G22865T ) Query: A12666C,G22865T Samples: 10 Countries: UK, Canada Tree:

Screenshot 2024-07-02 alle 21 31 51

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_26c56_4535e0.json?f_userOrOld=uploaded%20sample

IDs: EPI_ISL_19176954, EPI_ISL_19198249, EPI_ISL_19198278, EPI_ISL_19201542, EPI_ISL_19224876, EPI_ISL_19225248, EPI_ISL_19225259, EPI_ISL_19225261, EPI_ISL_19225326, EPI_ISL_19230760

FedeGueli commented 1 week ago

it could be slow.

FedeGueli commented 1 week ago

Designated KR.3.3.2 via https://github.com/cov-lineages/pango-designation/commit/7125e606818312b78f0756d7fcab6dba92dd0a9e