Closed aviczhl2 closed 1 week ago
23, Norway
25, Netherlands
There seems to be some new branches of the Trio gathered together.
The sum of the 3 major sub-branches is 40 now.
Now in the G5617T branch there is a subbranch sampled in Israel and in Arizona that features Orf9b:D16G (A28330G) the signature of BA.5.2 and it is a FULL QUAD BRANCH! (all the G5617T!)
Now in the G5617T branch there is a subbranch sampled in Israel and in Arizona that features Orf9b:D16G (A28330G) the signature of BA.5.2 and it is a FULL QUAD BRANCH! (all the G5617T!)
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice10_genome_test_204b4_df0510.json?c=userOrOld&label=id:node_7207062
It shall be a separate branch?
Nope it can emerge directly from JN.1.16.1+S:T572I. The 31del can be branch specific. So better designate JN.1.16.1+S:T572I as LF.x and that specific S:S31del branch as LF.x.1. @corneliusroemer
Nope it can emerge directly from JN.1.16.1+S:T572I. The 31del can be branch specific. So better designate JN.1.16.1+S:T572I as LF.x and that specific S:S31del branch as LF.x.1. @corneliusroemer
agree no way to establish that
The Deflirt branch went to 7 today with two samples from Israel
8 in the new Deflirt branch (Washington)
C23277T,T22928C,G22599C,G5617T
it looks like it now got only 7
the Full Quad branch reached 11 and could be something to monitor closely
It seems that all 3 branches stopped growing. Close down.
JN.1.16.1+S:T572I(C23277T)
Given the extreme convergence I cannot find a query to describe exactly JN.1.16.1+S:T572I, and they most likely emerged separately. There are currently 3 major branches, C12073T, C24466A, and G5617T branch. They may or may not be independent branches. The sum of the seqs is 40.
GISAID query for 12073T branch : C23277T,T22928C,G22599C,C12073T GISAID query for 24466A branch: C23277T,T22928C,G22599C,C24466A GISAID query for 5617T branch (FULL QUAD + Orf9b:D16G): C23277T,T22928C,G22599C,G5617T
No. of seqs: 21(Sweden 2 Slovenia 1 Japan 2 Ireland 2 France 1 UK 13)
First: EPI_ISL_19135064, Japan, 2024-4-30 Latest: EPI_ISL_19225376, UK, 2024-6-18
usher![image](https://github.com/sars-cov-2-variants/lineage-proposals/assets/10445944/e62e873e-dba0-4cd1-93d1-014b2d4b21d9)