search

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 2 forks source link

JN.1.1+S:R346T+S:S31del with C11747T branch (42 seqs, 11 countries) #1705

Closed DailyCovidCases closed 1 week ago

DailyCovidCases commented 1 week ago

From branch 3 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502 JN.1.1+S:R346T+S:S31del Query: del21653_21655,C11747T, G22599C,-9442 No. of seqs: 42 First: EPI_ISL_18879470, 2024-1-28 Latest: EPI_ISL_19220432, 2024-6-19 usher Screenshot (135)

FedeGueli commented 1 week ago

correct query is : del21653_21655,C11747T, G22599C,-T22930A,-A8812G,-T3488C,-t22928C,-9442,-C21654T,

and it gives only 29sequences and only one from June. i think it is worth to be closed.

aviczhl2 commented 1 week ago

correct query is : del21653_21655,C11747T, G22599C,-T22930A,-A8812G,-T3488C,-t22928C,-9442,-C21654T,

and it gives only 29sequences and only one from June. i think it is worth to be closed.

They may get T22928C or T22930A after acquiring S:S31-.

FedeGueli commented 1 week ago

yeah they should be checked then, consider that JN.1.1 is a slow backbone