LB.1.3.3 (S:K182R) with a further S:N148T sublineage (8 seqs, 2 countries)

[aviczhl2]

LB.1.3+C9163T, A22107G(S:K182R)

GISAID query: C18131T,C9163T,A22107G,-16386 No. of seqs: 7(Netherlands 2 France 3 Israel 1 Belgium 1)

First: EPI_ISL_19205794, 2024-5-28, France Latest: EPI_ISL_19242728, 2024-6-30, Israel

usher

With a singlet with S:N148T Query: G2305T, C17502T,T3565C

[FedeGueli]

added a potential query for the 148T singlet: With a singlet with S:N148T Query: new: G2305T, C17502T,T3565C (old: G2305T, G27281A,T3565C)

[FedeGueli]

there should be a LB.1.3 + 182E from India. i m looking into it C5310T, C22858T,A22106G 3 on Usher:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_ea51_77e310.json?c=userOrOld

[aviczhl2]

+1 Israel

[FedeGueli]

+1 Israel

It is the second sequence with S:N148T Query for the N148T branch : G2305T, C17502T,T3565C Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_83e5_e8a790.json?label=id:node_11553737

[aviczhl2]

13, Germany, Canada, Denmark

[aviczhl2]

21, Italy

[aviczhl2]

26, USA, UK

[FedeGueli]

Please propose it

[FedeGueli]

there should be a LB.1.3 + 182E from India...

this is now 6 with four samples from US quite recent i m proposing it.

[FedeGueli]

Designated LB.1.3.3 via https://github.com/cov-lineages/pango-designation/commit/1d153da0d1cd2fd514eaf0d3586dfbe353037b15 i suggest to re open it to track the S:N148T sublineage.

[FedeGueli]

Milestone in the commit

[FedeGueli]

6 now, reopened

[aviczhl2]

6 seqs in USA and Israel