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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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LB.1.8 with S:T572I (64 sequences, 6 countries including three South-Central American countries ) #1731

Closed FedeGueli closed 3 months ago

FedeGueli commented 4 months ago

LB.1.8 (WITHOUT S:S31Del) is over 50% in Venezuela in June and over 10% in Guatemala meaning it is locally a leading lineage

Defining mutations : LB.1.8 >> S:t572I (C23277T) Query: C23277T,A2618G,G22111T Samples: 15 Countries: 4 Venezuela, Guatemala, Costa Rica, US (Utah, Illinois, Tennessee) IDs: EPI_ISL_19199621, EPI_ISL_19199624, EPI_ISL_19199629, EPI_ISL_19199636-19199637, EPI_ISL_19212156, EPI_ISL_19226482, EPI_ISL_19256363, EPI_ISL_19256367, EPI_ISL_19256383, EPI_ISL_19256720, EPI_ISL_19256732, EPI_ISL_19256740-19256741, EPI_ISL_19256743 Tree:

Screenshot 2024-07-11 alle 11 07 04

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2ca6a_fa0230.json?label=id:node_7196115

There is quite spike diversity in the tree with S:A222T, S:L441I , S:S31P , S:N148T , so we would expect that this will grow and evolve further

FedeGueli commented 4 months ago

26 now with one GBW sample from France not caught by the query.

Screenshot 2024-07-27 alle 11 26 45

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_59228_4bc150.json?c=userOrOld&label=id:node_11561033

FedeGueli commented 3 months ago

42

FedeGueli commented 3 months ago

44 Closing this for now

Over-There-Is commented 2 months ago

64

FedeGueli commented 2 months ago

64

thx no one recent