KP.3.1 got again S:S31del and Orf1a:N4256S (NSP10_N3S) ( 14 seqs, 8 places)

FedeGueli commented 2 months ago

KP.3.1 acquired again s:S31del and curiously also this time, AS KP.3.1.1, it is accompanied by a NSP10 mutation that will make possible to track the lineage. it is already in three countries so we will see if it will be as fast as the "Leading cousin"

KP.3.1>> Orf1a:N4256S (NSp10_N3S), S:S31del (Del21653-55) Query:A13032G,del21653 Samples:3 (EPI_ISL_19259541, EPI_ISL_19261998, EPI_ISL_19280024) Country: Italy (First sample collected on 2024-06-26), France (via GBW) , Netherlands

Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_1d7d9_9fb80.json?c=userOrOld&label=id:node_11557721

FedeGueli commented 1 month ago

+1 IT

FedeGueli commented 1 month ago

likely dead closing this

FedeGueli commented 1 month ago

After a hyatus two recent samples of this have been uploaded one from Canada and one very recent from Singapore, this last one has also S:Q271E a C>G mutation. Reopening it for a while.

FedeGueli commented 2 weeks ago

+1 Germany

FedeGueli commented 1 week ago

11 US

FedeGueli commented 2 days ago

14, Poland

sars-cov-2-variants / lineage-proposals

KP.3.1 got again S:S31del and Orf1a:N4256S (NSP10_N3S) ( 14 seqs, 8 places) #1770