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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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JN.1.7 subranch with S:F456L and Orf1b:A1428V (48 seqs, 13 countries) #1800

Open Over-There-Is opened 1 month ago

Over-There-Is commented 1 month ago

Found with @aviczhl2 's phylogenic tree analysis tool.

JN.1.7> C25416T> C25578T> C17750T(Orf1b:A1428V), T24304C> T22928C(S:F456L) Query: C17750T, T22928C, T24304C

Earliest sequence: 05-11 Zürich, Switzerland EPI_ISL_19178040 Latest sequence: 07-14 Ontario, Canada EPI_ISL_19281252 Regions Detected: Canada 5, Netherlands 4, Germany 2, Spain 2, Switzerland 2, US 2, France 1, Portugal 1, UK 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_633c2_a35720.json?gt=nuc.25416T&label=id:node_7212051 image

Sequences: EPI_ISL_19178032, EPI_ISL_19178040, EPI_ISL_19185909, EPI_ISL_19202236, EPI_ISL_19230346, EPI_ISL_19243719, EPI_ISL_19253418, EPI_ISL_19254411, EPI_ISL_19258458, EPI_ISL_19266028, EPI_ISL_19272969, EPI_ISL_19273805, EPI_ISL_19277312, EPI_ISL_19280241, EPI_ISL_19281252, EPI_ISL_19281372, EPI_ISL_19281375, EPI_ISL_19283944, EPI_ISL_19292932, EPI_ISL_19294028
Over-There-Is commented 1 month ago

39, Ireland

FedeGueli commented 3 weeks ago

42, England Sweden new countries

Over-There-Is commented 3 weeks ago

42, England Sweden new countries

Both England and Scotland belongs to United Kingdom.

FedeGueli commented 3 weeks ago

missed the scottish sample.

Over-There-Is commented 1 week ago

Japan

Over-There-Is commented 2 days ago

Luxembourg

FedeGueli commented 2 days ago

still only 4 from August although from 3 countries