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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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MH.1+Orf1a:H1108Y+S:P85S (50 seqs, 9 countries) #1823

Open xz-keg opened 3 months ago

xz-keg commented 3 months ago

MH.1+C10183T+C25413T+A178T+C5770T+C3587T(Orf1a:H1108Y)+C21815T(S:P85S)

GISAID query: C21815T, C3587T, C25413T No. of seqs: 19(France 1 Israel 12 China 1 USA 5(2 from Netherlands))

First: EPI_ISL_19206005, USA from Netherlands , 2024-6-5 Latest: EPI_ISL_19308803, Israel, 2024-7-25

usher image

FedeGueli commented 3 months ago

S:85 is def on the move in the past two months and since JN.1 arose more generally. Before it was in some Delta and Gamma sublineages and while in AY.4 did nothing, in P.1 it seemed slighty advantageous, that could be interesting because Gamma had the N Glycan at S:T>N20 , so this could point toward an interaction between the two regions (S:20-30 and S:85)

cc @ryhisner what do you think?

xz-keg commented 2 months ago

21, Canada, UK

xz-keg commented 2 months ago

+1 Switzerland

FedeGueli commented 1 month ago

41, 7 of them since sept 1

xz-keg commented 2 weeks ago

49, Denmark

DailyCovidCases commented 1 week ago

@FedeGueli Propose this branch?

FedeGueli commented 1 week ago

C21815T, C3587T, C25413T

for. now it seems not able to compete.