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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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MH.1+Orf1a:H1108Y+S:P85S (51 seqs, 9 countries) #1823

Closed xz-keg closed 3 days ago

xz-keg commented 3 months ago

MH.1+C10183T+C25413T+A178T+C5770T+C3587T(Orf1a:H1108Y)+C21815T(S:P85S)

GISAID query: C21815T, C3587T, C25413T No. of seqs: 19(France 1 Israel 12 China 1 USA 5(2 from Netherlands))

First: EPI_ISL_19206005, USA from Netherlands , 2024-6-5 Latest: EPI_ISL_19308803, Israel, 2024-7-25

usher image

FedeGueli commented 3 months ago

S:85 is def on the move in the past two months and since JN.1 arose more generally. Before it was in some Delta and Gamma sublineages and while in AY.4 did nothing, in P.1 it seemed slighty advantageous, that could be interesting because Gamma had the N Glycan at S:T>N20 , so this could point toward an interaction between the two regions (S:20-30 and S:85)

cc @ryhisner what do you think?

xz-keg commented 3 months ago

21, Canada, UK

xz-keg commented 3 months ago

+1 Switzerland

FedeGueli commented 2 months ago

41, 7 of them since sept 1

xz-keg commented 1 month ago

49, Denmark

DailyCovidCases commented 1 month ago

@FedeGueli Propose this branch?

FedeGueli commented 1 month ago

C21815T, C3587T, C25413T

for. now it seems not able to compete.

FedeGueli commented 3 days ago

dead