XEC: Potential KS.1.1/KP.3.3 recombinant(27 seqs, 7 countries)

[Over-There-Is]

Mutations based on JN.1: C18657T, C19716T, C21627A, T21738C, T22928C, C23039G, G24872T, C25006T, C28291A, G28884C The 5' donor could be from a pre-C6701T KS.1.1 branch with C18657T. Breakpoint: 21738\~22599 Query: C18657T, C19716T, C25006T

Earliest sequence: 06-24 Berlin, Germany EPI_ISL_19283881 Latest sequence: 07-19 Berlin, Germany EPI_ISL_19300184 Regions detected: Germany 11, France 1, Netherlands 1, South Korea 1, UK 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_592af_f5e730.json?f_userOrOld=uploaded%20sample

Sequences: EPI_ISL_19270230, EPI_ISL_19283843, EPI_ISL_19283881, EPI_ISL_19283891, EPI_ISL_19283905, EPI_ISL_19288354, EPI_ISL_19292873, EPI_ISL_19299882, EPI_ISL_19300184, EPI_ISL_19304941, EPI_ISL_19308953, EPI_ISL_19308959, EPI_ISL_19308971, EPI_ISL_19308982, EPI_ISL_19308990

[aviczhl2]

So this is KP.3.3+T22N,F59S?

[aviczhl2]

S:T22N is usually missed from sequencing. Use C19716T, G24872T, C25006T we can get an actual toll of 15, all 15 seqs have T21738C and really belong to this recomb.

[Over-There-Is]

S:22 seems getting affected by the insertion.

[JosetteSchoenma]

+3 in today's upload from the Netherlands. The now 4 Dutch samples are from 4 separate regions.

[FedeGueli]

It seems fast.

[ryhisner]

+3 in today's upload from the Netherlands. The now 4 Dutch samples are from 4 separate regions.

Also two from Sweden, three from the United States (Virginia), and one from Spain uploaded today. That's some really fast geographic spread.

[FedeGueli]

Please propose it. Ping @corneliusroemer rapid designation needed

[aviczhl2]

+2 GBW from Germany , 1 USA local and 1 from Sweden today.

[FedeGueli]

@Over-There-Is please propose it

[Over-There-Is]

Transferred to cov-lineages/pango-designation#2717.

[FedeGueli]

Designated XEC via https://github.com/cov-lineages/pango-designation/commit/c8b9d2ded49bf3d2870e94d1702046efeea8e533