sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.1.1.3 got S:K478T( 13 US mostly Iowa) #1893

Open FedeGueli opened 3 weeks ago

FedeGueli commented 3 weeks ago

S:K478T is now trending globally even if its exact share is not easy to establish due the confounding of missing coverage.

Here i want to propose a mini saltation S:K478T lineage under KP.1.1.3

KP.1.1.3 > S:K478T (A22995C rev), Orf1a:H919Y (C3020T), C3787T, ORF1a:I2076V (A6491G), C6628T, Orf1b:A241T (G14188A),Orf1b:F1557L (T18136C), T26130C Query: C3020T, C3787T, A6491G Samples: 6 ( 3/6 sampled in August) Country : 1 US (Iowa, Colorado) Tree:

Screenshot 2024-08-19 alle 18 11 04

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_635b7_36c130.json?label=id:node_7059171

FedeGueli commented 2 weeks ago

10 Nevada