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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XEC + Orf1a:I1367L (41, 11 countries) #1908

Closed FedeGueli closed 1 week ago

FedeGueli commented 3 weeks ago

XEC has two main branches one defined by Orf1a:A599T the other defined by Orf1a:I1367L that is convergent with Kp.3.3.4

Defining mutations: XEC > Orf1a:I1367L (A4364C) Query: C19716T, C25006T,A4364C Samples: 11 Countries: 6 Tree:

Screenshot 2024-08-22 alle 12 52 11

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_1cf79_7169a0.json?c=gt-ORF1ab_1367&f_userOrOld=uploaded%20sample&label=id:node_7013744

Memorablea commented 3 weeks ago

I noticed the branche for S:157,S:158,S:403, but I am unable to locate them?

FedeGueli commented 3 weeks ago

I noticed the branche for S:157,S:158,S:403, but I am unable to locate them?

It is likely an artifact

Memorablea commented 2 weeks ago

Canada+8.19

FedeGueli commented 2 weeks ago

It enetered a Canadian cluster so we will have perturbated growth advantage for a while unfortunately.

FedeGueli commented 2 weeks ago

Canada+8.19

thx

Memorablea commented 2 weeks ago

Japan+1，Germany+1，Ireland+2,23now

FedeGueli commented 2 weeks ago

Thx

FedeGueli commented 2 weeks ago

+1 FInland

aviczhl2 commented 2 weeks ago

+1 Italy

aviczhl2 commented 2 weeks ago

It is likely faster than XEC. Please propose (after your vacation). image

FedeGueli commented 1 week ago

now proposed in https://github.com/cov-lineages/pango-designation/issues/2768