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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.3.1.1 subbranch with S:I1225T and Orf1a:V2047G(36 seqs, 10 countries) #1914

Open Over-There-Is opened 2 months ago

Over-There-Is commented 2 months ago

KP.3.1.1> T6405G(Orf1a:V2047G), T25236C(S:I1225T) Query: T6405G, T25236C

Bug solved by Usher This branch has been split into 2 parts in usher due to the S:455-456 artefactual reversion. @angiehinrichs

Earliest sequence: 05-24 Alburquerque, Badajoz, Extremadura, Spain EPI_ISL_19188412 Latest sequence: 08-02 Limburg, Netherlands EPI_ISL_19351202 Regions detected: Spain 12, Netherlands 6, Guatemala1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_2f83_96f500.json?c=country&f_userOrOld=uploaded%20sample image

Sequences: EPI_ISL_19188412, EPI_ISL_19188414, EPI_ISL_19188420, EPI_ISL_19188435, EPI_ISL_19197147, EPI_ISL_19219066, EPI_ISL_19244290, EPI_ISL_19260882, EPI_ISL_19260888, EPI_ISL_19263176, EPI_ISL_19263184, EPI_ISL_19265537, EPI_ISL_19265575, EPI_ISL_19293037, EPI_ISL_19293180, EPI_ISL_19325139, EPI_ISL_19334446, EPI_ISL_19351202, EPI_ISL_19351444

AngieHinrichs commented 2 months ago

This branch has been split into 2 parts in usher due to the S:455-456 artefactual reversion. @AngieHinrichs

Good find @Over-There-Is. I guess it's time for some reversion-masking in KP.3.1.1. Should be fixed later today in 2024-08-29 tree.

FedeGueli commented 1 month ago

Slow apparently

Over-There-Is commented 1 month ago

Deutschland

FedeGueli commented 1 month ago

it is still splitted in two?

Over-There-Is commented 1 month ago

it is still splitted in two?

no any more.

FedeGueli commented 1 month ago

it is still splitted in two?

no any more.

oh good news, i ve edited the proposal then

Over-There-Is commented 1 month ago

Canada

FedeGueli commented 1 month ago

too slow to be worth tracking it

FedeGueli commented 1 month ago

24 now with one recent from Netherlands

FedeGueli commented 3 weeks ago

27, France with one super recent from Spain

FedeGueli commented 1 week ago

33 , 6 since Oct 1 from 4 different countries, i have tio say i wrongoed this as slow. it is not. Likely we saw it very early in Spain hence it looked like to be a slow one then

xz-keg commented 5 days ago

36, Portugal

Over-There-Is commented 4 days ago

France, Germany, Luxembourg, Netherlands, Portugal, Spain, Canada, Guatemala, US, Australia

FedeGueli commented 4 days ago

France, Germany, Luxembourg, Netherlands, Portugal, Spain, Canada, Guatemala, US, Australia

5 of them in october please propose if it reaches 50