search

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 3 forks source link

JN.1.1.5(S:R346T)+S:F456L, S680Y, Orf1b:I1293V misplaced under JN.1.1.6 (11 sequences, 4 countries) #1925

Closed Over-There-Is closed 2 months ago

Over-There-Is commented 3 months ago

Usher's placement: JN.1.1.6> G22599C(S:R346T)> C9142T> A17344G(Orf1b:I1293V), C23601A(S:S680Y) JN.1.1.5 subbranch? Query: A17344G, C23601A

Earliest sequence: 02-15 Songkhla, Thailand EPI_ISL_19023300 Latest sequence: 06-02 Hawally, Kuwait EPI_ISL_19213971 Regions detected: Russia 8, Kuwait 1, Thailand 1, US 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2ffb9_ad4060.json?c=country&label=id:node_7120357 image

And Israel/ICH-741201876/2024|EPI_ISL_19283178|2024-07-14 (LB.1.3) seems also related to this branch, potential recombinant or contamination.

Sequences: EPI_ISL_19023300, EPI_ISL_19081546, EPI_ISL_19081563, EPI_ISL_19193275, EPI_ISL_19213971, EPI_ISL_19245567, EPI_ISL_19260519, EPI_ISL_19297295, EPI_ISL_19297301, EPI_ISL_19297308, EPI_ISL_19297317

FedeGueli commented 3 months ago

Please complete it or close.

Over-There-Is commented 3 months ago

updated

FedeGueli commented 3 months ago

Thank you @Over-There-Is !

FedeGueli commented 3 months ago

it is a sibling lineage of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1626

xz-keg commented 2 months ago

no new seqs