search

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 2 forks source link

KP.1.1.3 subbranch with Orf1b:Q1546H and Orf9b:G38D (114 seqs, 19 countries) #1931

Open Over-There-Is opened 2 months ago

Over-There-Is commented 2 months ago

KP.1.1.3> C15120T, G18105T(Orf1b:Q1546H), G28396A(Orf9b:G38D) Query: C15120T, G18105T, G28396A

Earliest sequence: 04-28 Rhône, Auvergne-Rhône-Alpes, France EPI_ISL_19132815 Latest sequence: 08-14 Ontario, Canada EPI_ISL_19358041 Regions detected: US 26(1 from Greece, 1 from Spain, 1 from South Korea), Canada 10, France 6, Spain 3, Ireland 2, Italy 2, Germany 1, Slovenia 1, Sweden 1, Switzerland 1, UK 1

There are also 12 sequences from US without G28396A, I'm not sure whether these sequences are actually reversed or not. Query: C10507T, C15120T, G18105T, -G28396A

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_264e9_cb66c0.json?c=country&label=id:node_7069094 image

Sequences: EPI_ISL_19132815, EPI_ISL_19176380, EPI_ISL_19185650, EPI_ISL_19189862, EPI_ISL_19191528, EPI_ISL_19191715, EPI_ISL_19191758, EPI_ISL_19198939, EPI_ISL_19216190, EPI_ISL_19217791, EPI_ISL_19223399, EPI_ISL_19223432, EPI_ISL_19239298, EPI_ISL_19243912, EPI_ISL_19251991, EPI_ISL_19254322, EPI_ISL_19258300, EPI_ISL_19259223, EPI_ISL_19260268, EPI_ISL_19267140, EPI_ISL_19277694, EPI_ISL_19286190, EPI_ISL_19286493, EPI_ISL_19287327, EPI_ISL_19289101, EPI_ISL_19294328, EPI_ISL_19294332, EPI_ISL_19294476, EPI_ISL_19294538, EPI_ISL_19298286, EPI_ISL_19298363, EPI_ISL_19302206, EPI_ISL_19302716, EPI_ISL_19304770, EPI_ISL_19316505, EPI_ISL_19318091, EPI_ISL_19318591, EPI_ISL_19319858, EPI_ISL_19326194, EPI_ISL_19326691, EPI_ISL_19327663, EPI_ISL_19329098, EPI_ISL_19329443, EPI_ISL_19332569, EPI_ISL_19333744, EPI_ISL_19344269, EPI_ISL_19344278, EPI_ISL_19346112, EPI_ISL_19346116-19346117, EPI_ISL_19347691, EPI_ISL_19349203, EPI_ISL_19349836, EPI_ISL_19354853, EPI_ISL_19358041, EPI_ISL_19358475 Sequences without G28396A: EPI_ISL_19240337, EPI_ISL_19240339, EPI_ISL_19293476, EPI_ISL_19293502, EPI_ISL_19293519, EPI_ISL_19293538, EPI_ISL_19293541, EPI_ISL_19293579, EPI_ISL_19307241, EPI_ISL_19343163, EPI_ISL_19343310, EPI_ISL_19343321
Over-There-Is commented 2 months ago

Netherlands +1, Japan +1 And the Japanese case has travelling history from Vietnam and Indonesia. Which country the patient gets infected is unknown, but I think this lineage has spread to both countries.

Over-There-Is commented 1 month ago

US+4

FedeGueli commented 1 month ago

69

FedeGueli commented 1 month ago

No recent samples closing it

Over-There-Is commented 1 month ago

79, Brazil

Over-There-Is commented 1 month ago

New York 09-20

FedeGueli commented 1 month ago

not fast apparently

DailyCovidCases commented 3 weeks ago

Now 89 seqs

Over-There-Is commented 3 weeks ago

El Salvador via US-CA

FedeGueli commented 3 weeks ago

Still circualting hard it will be able to compete then

Over-There-Is commented 2 weeks ago

+3, NZ

Over-There-Is commented 2 weeks ago

adding 12 american dropout

FedeGueli commented 2 weeks ago

adding 12 American dropout thx

DailyCovidCases commented 3 days ago

This branch can be proposed on the main page

FedeGueli commented 2 days ago

Slow