XDV.1.7 + S:T22N + S:V62F (4 seqs - Japan and , via GBW, Taiwan, Shanxi)

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages

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XDV.1.7 + S:T22N + S:V62F (4 seqs - Japan and , via GBW, Taiwan, Shanxi) #1966

Closed FedeGueli closed 1 month ago

FedeGueli commented 1 month ago

Just spotted this recent branch of XDV.1 with trending mutation S:T22N: being caught in two different countries better tracking it here: XDV.1.7 [C8950T > Orf1a:D2980N (G9203A)] >> C5173T > Orf1a:L681F ( C2306T), C8683T, S:T22N (C21627A), S:V62F (G21746T) Query:C2306T, C8683T, C21627A Samples: 3 Countries: 2 (Japan, Taiwan-GBW) Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice6_genome_test_1022f_248f80.json?c=userOrOld&label=id:node_7162368

aviczhl2 commented 1 month ago

+1 Shanxi

FedeGueli commented 1 month ago

Designated XDV.1.7.1 via https://github.com/cov-lineages/pango-designation/commit/0d17efb4331b65679cee32080169401649c7f943

FedeGueli commented 4 days ago

a sibling branch of XDV.1.7.1 got S:A522S and then S:Q414K (masked on usher) Query for it: G23126T ,C2695T, C4795T

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1a4cc_bc8b40.json?c=gt-S_414&f_userOrOld=uploaded%20sample&gmax=25384&gmin=21563&label=id:node_11676682