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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XEC + S:G252S on the ORF1a:A599T branch (18 in 4 countries ) #1993

Closed Fearuncle closed 5 days ago

Fearuncle commented 2 months ago

image image tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_25d52_d09b10.json?f_userOrOld=uploaded%20sample

First Seq: 2024-08-12 Most Recent: 2024-08-20

Gisaid: G22316A, T25039C,T3565C

EPI_ISL_19378281 EPI_ISL_19375825 PQ277301.1 PQ277106.1

FedeGueli commented 2 months ago

Query edited to exclude bat viruses: G22316A, T25039C,T3565C

FedeGueli commented 2 months ago

252V 253G were the defining of the two main XBB branches while not relevant until now in JN.1, lets see what this will do.

xz-keg commented 1 month ago

6 on GISAID now, including one GBW from China.

FedeGueli commented 4 weeks ago

12 on Gisaid. @Fearuncle where the other samples not on Gisaid are from?

xz-keg commented 4 weeks ago

13 on GISAID now.

Fearuncle commented 3 weeks ago

12 on Gisaid. @Fearuncle where the other samples not on Gisaid are from?

image

xz-keg commented 3 weeks ago

12 on Gisaid. @Fearuncle where the other samples not on Gisaid are from?

image

most are duplicates of same seqs from different platforms.

Better count according to GISAID to avoid duplication, and highlight the non-GISAID seqs that are sure not having a GISAID-backup. (having different collection date etc.)

FedeGueli commented 1 week ago

It seems slow

FedeGueli commented 5 days ago

Local an d slow closing it