sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XDV.1 + ORF3a:A98T + S:K478I + ORF1a:T891I (21, 3 countries) 8% prevalence in Hubei in late August > growing #1999

Closed Fearuncle closed 3 weeks ago

Fearuncle commented 1 month ago

image tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_39561_fbb950.json?f_userOrOld=uploaded%20sample

First Seq: 2024-07-17 Most Recent: 2024-08-27

Gisaid Query: G25684A, A405G, T22930A, C22295A

EPI_ISL_19384843 EPI_ISL_19384849 EPI_ISL_19384865 EPI_ISL_19384864 EPI_ISL_19384847 EPI_ISL_19384855 EPI_ISL_19384845 EPI_ISL_19384868 EPI_ISL_19384839 EPI_ISL_19384838 EPI_ISL_19384869 EPI_ISL_19384609 EPI_ISL_19299348 EPI_ISL_19384856 EPI_ISL_19384848 EPI_ISL_19384852 EPI_ISL_19384851 EPI_ISL_19384457 EPI_ISL_19384862

FedeGueli commented 1 month ago

Convergent with XDV.1.5 it seems XDV likes very much mutations at K478 >T,Q,I

FedeGueli commented 1 month ago

Looking at samples collected in Hubei after August 15 it is around 8% growing from 1% in the first 15 days of August. Covspectrum scores it as the highest for growth advantage right now, we must wait for spread outside HUbei to draw any conclusions but still something to watch closely.

FedeGueli commented 1 month ago

+1 from Illinois

FedeGueli commented 1 month ago

it seemed to be a small cluster.

xz-keg commented 4 weeks ago

+1 Netherlands

FedeGueli commented 3 weeks ago

+1 Heilongjiang