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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.3.1.1 plus S:R237M and Orf1b:A545T emerged in Chile (6, 3 countries) #2001

Closed FedeGueli closed 3 weeks ago

FedeGueli commented 1 month ago

S:R237M has been quite homoplasic in KP.3.1.1 Usher collects unrelated branches under one big branch but there have been several emergence of S:R237M

Screenshot 2024-09-10 alle 10 51 41

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_fea7_7230.json?f_userOrOld=uploaded%20sample&label=id:node_7110369 Here i want to propose the Chilean branch of it that has also a NSp12:A554T and then acquired also Orf8:K44R, due the recency of its sequences

KP.3.1.1 >> S:R237M (G22272T) > G5155A , Orf1b:A545T (G15100A), C24466A Query: G15100A, C24466A ,G5155A Samples: 5 Country: 2 (CHile 4, Spain 1) Tree:

Screenshot 2024-09-10 alle 10 50 34

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice5_genome_test_8607_f64200.json?c=userOrOld&label=id:node_7123294

FedeGueli commented 1 month ago

+1 Lux