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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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LB.1 subbranch with S:M731I (32, CA 23, US 9) and further Orf3d:Q22*(CA-ON 22) on Orf1b:R276C, Orf3a:A33S branch #2009

Open Over-There-Is opened 1 week ago

Over-There-Is commented 1 week ago

LB.1> C14293T(Orf1b:R276C), T22357C, G25489T(Orf3a:A33S)> T18033C, C18060T> G23755T(S:M731I)> C22639T, C25587T(Orf3d:Q22*) Query: C14293T, T18033C, G23755T

Earliest sequence: 06-11 Puerto Rico, USA EPI_ISL_19224197 Latest sequence: 08-30 Ontario, Canada EPI_ISL_19389530 Regions detected: Canada 23, US 9(1 not on GISAID, including Puerto Rico 4)

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_12dad_959d0.json?c=country&label=id:node_7030454 image

Sequences: EPI_ISL_19224197, EPI_ISL_19224202, EPI_ISL_19234054, EPI_ISL_19284558-19284559, EPI_ISL_19303437, EPI_ISL_19318394, EPI_ISL_19328487, EPI_ISL_19336889, EPI_ISL_19343671, EPI_ISL_19386417, EPI_ISL_19386471, EPI_ISL_19386709-19386710, EPI_ISL_19386714-19386715, EPI_ISL_19389529-19389530, EPI_ISL_19389532, EPI_ISL_19389534, EPI_ISL_19389544, EPI_ISL_19389583, EPI_ISL_19389586, EPI_ISL_19389594, EPI_ISL_19389605, EPI_ISL_19389624, EPI_ISL_19389626, EPI_ISL_19389639, EPI_ISL_19389641, EPI_ISL_19389658, EPI_ISL_19389671, PQ108181.1

FedeGueli commented 6 days ago

It likely revived due to a Canadian cluster.