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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (20 sequences, 6 countries) #2026

Closed Over-There-Is closed 1 month ago

Over-There-Is commented 1 month ago

KP.3.1.1> C1441T> A26760C(M:I80L), G28423C(Orf9b:R47P) Query: A26760C, G28423C

Earliest sequence: 07-22 New York City, New York, USA EPI_ISL_19310813 Latest sequence: 09-06 Utah, USA EPI_ISL_19416909 Regions detected: US 5, Italy 4, Denmark 3, Canada 2

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5e932_acec00.json?c=country&label=id:node_7033124 image Sequences: EPI_ISL_19310813, EPI_ISL_19340122, EPI_ISL_19378173, EPI_ISL_19378191, EPI_ISL_19378985, EPI_ISL_19410881, EPI_ISL_19410913, EPI_ISL_19410917, EPI_ISL_19411048, EPI_ISL_19412118, EPI_ISL_19416249, EPI_ISL_19416902, EPI_ISL_19416909, EPI_ISL_19420984

FedeGueli commented 1 month ago

M:I80L despite being jsut in 200 seqs was featured in AY.122 sublineage in Sweden that reached 100Seqs and showed an advantage over Delta and Ay.122 in Sweden. it had also S:S221L but i don't think the advantage came from that

FedeGueli commented 1 month ago

+1 NJ

Over-There-Is commented 1 month ago

It's too hard to handle so many proposals.

FedeGueli commented 1 month ago

It's too hard to handle so many proposals.

it happens all the time don't worry. i will close many in the next days. better cklosing and reopening if something starts growing than leaving an issue lost among hundreds

Over-There-Is commented 1 month ago

Ireland, Sweden

FedeGueli commented 1 month ago

Please propose it it is showing sings of advantage all to be confirmed. @ryhisner pleae take a look two interesting non spike muts (not urgent)

FedeGueli commented 1 month ago

@Over-There-Is did u change the query? i had a different one registered (T23464C, A26760C, G28423C)

Over-There-Is commented 1 month ago

I have removed T23464C from the query to include sequences without it.

Over-There-Is commented 1 month ago

And I have a deadline in 2 days, so I have no enough time to transfer this proposal right now.

FedeGueli commented 1 month ago

And I have a deadline in 2 days, so I have no enough time to transfer this proposal right now.

no hurry

Over-There-Is commented 1 month ago

It's still 20 sequences now. Should I propose it?

FedeGueli commented 1 month ago

It's still 20 sequences now. Should I propose it? yes plese

Over-There-Is commented 1 month ago

@Over-There-Is Should I transfer this issue to the man page right now?

Could anyone ban this account?

Over-There-Is commented 1 month ago

cov-lineages/pango-designation#2796

FedeGueli commented 1 month ago

cov-lineages/pango-designation#2796

Thx!