sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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LB.1.3 subbranch with N:Q9H, Orf9b:S6T(35, 7 regions) #2050

Open Over-There-Is opened 1 day ago

Over-There-Is commented 1 day ago

LB.1.3> G28300C(N:Q9H, Orf9b:S6T) Query: C18131T, G22111T, G28300C

Earliest sequence: 04-10 Yokosuka, Kanagawa, Japan EPI_ISL_19150859 Latest sequence: 09-11 Taiwan, China EPI_ISL_19414839 Regions detected: US 17(2 from Mainland China, 1 from Japan), China(Mainland 8, Taiwan 1), Japan 6, Canada 1, Denmark 1, Sweden 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_25efb_ab1920.json?c=country&label=id:node_11661141 image

Sequences: EPI_ISL_19093673, EPI_ISL_19094019, EPI_ISL_19150859, EPI_ISL_19175064, EPI_ISL_19223602, EPI_ISL_19260127, EPI_ISL_19274002, EPI_ISL_19295537, EPI_ISL_19304188, EPI_ISL_19310612, EPI_ISL_19312500, EPI_ISL_19315143, EPI_ISL_19315177, EPI_ISL_19345559, EPI_ISL_19345572, EPI_ISL_19352334, EPI_ISL_19353600, EPI_ISL_19358518, EPI_ISL_19358556, EPI_ISL_19361404, EPI_ISL_19361408, EPI_ISL_19362603, EPI_ISL_19365388, EPI_ISL_19369313, EPI_ISL_19369337, EPI_ISL_19371127, EPI_ISL_19371456, EPI_ISL_19392757, EPI_ISL_19392772, EPI_ISL_19405785, EPI_ISL_19414839, EPI_ISL_19420299, EPI_ISL_19420565, EPI_ISL_19420599, EPI_ISL_19420607

Over-There-Is commented 23 hours ago

Typo, 35

FedeGueli commented 21 hours ago

N:P9L was the defining mutation of AY.43, it never popped up again in fast lineages maybe due the S:P13L mutation in all Omicrons. So very good to track a similar mutation here. It seems around since a long time probably it is part of the wave of undersampled Chinese lineages .