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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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KP.1.1.1+S:T22N,N30-,S31-,F32I,K478T rev(10 seqs, 7 places including GBW from India and UAE) #2120

Open xz-keg opened 1 week ago

xz-keg commented 1 week ago

First highlighted in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1920#issuecomment-2382752474

There seems to be a KP.1.1.1 branch that shares the S:N30-,S31-,F32I with XDV.1.9.1 as well as S:T22N,K182N,K478T with MV.1 that is misplaced in an F59S flip-flop branch on usher.

KP.1.1.1+A6124G, C21627A, del21650_21655, T21656A, A22995C( S:T22N,N30-,S31-,F32I,K478T)

GISAID query: A6124G, C20104T,A22108C,-22995,A24819G No. of seqs: 8(USA 5(CA, GBW from India and UK), Ireland 1 Canada 1 UK 1)

First: EPI_ISL_19439491, USA-CA, 2024-8-12 Latest:EPI_ISL_19461123, GBW from UK, 2024-9-26

usher image

Everything on the A6124G branch belongs to this and no seq actually have S:F59S. @AngieHinrichs

FedeGueli commented 1 week ago

Thank you for proposing i noticed it the last week. it seems growing fast so very good to be proposed separately from the branch where uSher places it.

xz-keg commented 1 week ago

Change query to exclude the recombinant in #2134

FedeGueli commented 1 week ago

+1 France

xz-keg commented 1 week ago

+1 GBW from UAE

FedeGueli commented 6 days ago

PING @corneliusroemer this seems fast

FedeGueli commented 3 days ago

9 California