search

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
43 stars 2 forks source link

MC.13 subbranch with S:R765L split by usher(17 sequences, 7 Places) #2159

Open Over-There-Is opened 1 month ago

Over-There-Is commented 1 month ago

MC.13> G23856T(S:R765L) Query: C7113T, C10681T, G23856T

Earliest sequence: 07-02 Catalunya, Spain EPI_ISL_19418769 Latest sequence: 09-30 Utah, USA EPI_ISL_19463606 Regions detected: Canada 7, US 4(1 from Italy), France 2, Spain 1

The branch with Canadian sequences is placed under an artefactual S:S31F branch now.

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_233e8_cd8720.json?c=country&f_userOrOld=uploaded%20sample image

Sequences: EPI_ISL_19362033, EPI_ISL_19418769, EPI_ISL_19426659, EPI_ISL_19432362, EPI_ISL_19436799, EPI_ISL_19457441, EPI_ISL_19457587, EPI_ISL_19457593, EPI_ISL_19457597, EPI_ISL_19463606, EPI_ISL_19470360, EPI_ISL_19470663, EPI_ISL_19473159, EPI_ISL_19473469

xz-keg commented 1 month ago

@AngieHinrichs , now very many branches of KP.3.1.1 are splited due to the 31F artefact.

FedeGueli commented 1 month ago

Its advantage is likely boosted by Ontario samples.

@AngieHinrichs , now very many branches of KP.3.1.1 are splited due to the 31F artefact.

no in this case is something different : S:S31F derives from sequencers not able to read S:S31del especially in Denmark, but here all the 14 samples have S:S31del so something different ongoing.

FedeGueli commented 2 weeks ago

15, West Australia (new place)

FedeGueli commented 1 week ago

17, Australia