sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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BN.1.3.13 with S:A264D and Orf9b:S50L (28 seqs, 5 countries) #218

Closed aviczhl2 closed 1 year ago

aviczhl2 commented 1 year ago

BN.1.3.13 (S:V445A)+C3817T+C7006A,C22353A(S:A246D),C28432T(Orf9b:S50L)

GISAID query: T22896C,C17818T,C593T,C7390A GISAID query for S:A264D branch: C22353A,C28432T (12 seqs from China, Japan, South Korea and Singapore)

No. of seqs: 28 (USA 1 Japan 9(1 from Taiwan), Singapore 1(from Taiwan) South Korea 7(2 from Singapore) Thailand 1 Taiwan 6(1 from South Korea, 1 from Malaysia), Shanghai 2 Fujian 1)

First seq: EPI_ISL_17729868, USA, 2022-12-21 Latest seq: EPI_ISL_17811175, Shanghai, 2023-6-6

usher

Screenshot 2023-06-19 at 18 35 28
FedeGueli commented 1 year ago

Also S:A264D is popping up recently.

FedeGueli commented 1 year ago

@aviczhl2 being all the last samples from the branch with S: A264D i suggest to keep the issue just for this subbranch , last sample without S:A264D is from April in Taiwan, although it is possible low level circulation there could be somehting we can decide not to track. SO please re arrange the issue if you agre with my thoughts.

NkRMnZr commented 1 year ago

The non-A264D branch got an interesting saltation with S:D796H. There's a uptick with 796H from recent saltations, changing D796Y that introduced from Omicron basal.

Branch leading to Shanghai/SCDC-XG06-9816/2023|EPI_ISL_17987755|2023-06-27

nuc unique  A2483G, C9565T, G14187A, C23240T, T24808C, G26730A
nuc homoplasies C12854T, T23948C
ORF1ab  unique  I740V
ORF1ab  homoplasies P4197S
S   homoplasies Y796H
M   unique  V70I
aviczhl2 commented 1 year ago

Just realized that S:264D branch also has Orf9b:S50L

aviczhl2 commented 1 year ago

The BN.1.3+V445A is designated as BN.1.3.13 @FedeGueli

FedeGueli commented 1 year ago

The BN.1.3+V445A is designated as BN.1.3.13 @FedeGueli

thx!! i ve noticed again BN.1 +445A but then checking it was already designated, i missed it was from here! thank you very much !

aviczhl2 commented 1 year ago

25, USA

FedeGueli commented 1 year ago

Being already designated the aprental lineage i dont see the need to track it anymore.