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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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LB.1.3 subbranch with S:N185del, F186I and Orf1a:P4197S on Orf6:T10I branch(49, 4 countries in Americas) #2197

Open Over-There-Is opened 4 days ago

Over-There-Is commented 4 days ago

LB.1.3> G25947A, C27230T(Orf6:T10I)> C12854T(Orf1a:P4197S)> T5734C, T15003C, C25276T> del22116-22118(S:N185del, F186I)

Query: T5734C, T15003C, C25276T, del22115 Alternative query: T5734C, T15003C, C25276T, -A4675G, -C13694T Query for dropout sequences: T3565C, -T5734C, T15003C, C25276T(2) A264G, T5734C, T15003C, -C25276T(1)

Earliest sequence: 06-03 Sacramento, California, USA EPI_ISL_19308324 Latest sequence: 09-16 New York, USA EPI_ISL_19452706 Regions detected: US 46(1 from El Salvador, 2 not on GISAID), Brazil 1, Costa Rica 1, El Salvador 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_4c42b_6921f0.json?c=country&gt=nuc.13694C,4675A&label=id:node_7384725 image

Sequences: EPI_ISL_19212265, EPI_ISL_19269006, EPI_ISL_19304250, EPI_ISL_19304269, EPI_ISL_19304279-19304280, EPI_ISL_19304399, EPI_ISL_19304405, EPI_ISL_19308324, EPI_ISL_19313876, EPI_ISL_19316669, EPI_ISL_19319437, EPI_ISL_19324546, EPI_ISL_19332468, EPI_ISL_19335157, EPI_ISL_19346319, EPI_ISL_19347685, EPI_ISL_19369502, EPI_ISL_19371859, EPI_ISL_19373859, EPI_ISL_19378655, EPI_ISL_19383931, EPI_ISL_19390233, EPI_ISL_19391200, EPI_ISL_19405308, EPI_ISL_19408462, EPI_ISL_19420229, EPI_ISL_19422984, EPI_ISL_19423616, EPI_ISL_19425037, EPI_ISL_19425041, EPI_ISL_19428357, EPI_ISL_19428413, EPI_ISL_19428417, EPI_ISL_19429448, EPI_ISL_19434476, EPI_ISL_19439451, EPI_ISL_19452706, EPI_ISL_19471366, EPI_ISL_19474025, EPI_ISL_19474034, EPI_ISL_19493280, EPI_ISL_19497851, EPI_ISL_19503260, EPI_ISL_19503437, EPI_ISL_19517213, EPI_ISL_19517234, PQ040693.1, PQ041066.1

FedeGueli commented 3 days ago

Thx for highlighting this , i tracked this back in September in the chats too but to me it is dying off.