sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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MC.13 subbranch with Orf9b:V30A(81, 3 countries, mainly in US) #2198

Open Over-There-Is opened 3 weeks ago

Over-There-Is commented 3 weeks ago

MC.13> T28372C(Orf9b:V30A) Query: C7113T, C10681T, A28363C

07-02 San Joaquin, California, USA EPI_ISL_19304613 10-09 New York, USA EPI_ISL_19500166 US 63(5 not on GISAID, 1 without accessible query), Canada 1, UK 1

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5339f_6a52a0.json?c=country&gt=nuc.28372C&label=id:node_7250626 image

Sequences: EPI_ISL_19304613, EPI_ISL_19317561, EPI_ISL_19317909, EPI_ISL_19325690, EPI_ISL_19327828, EPI_ISL_19328883, EPI_ISL_19335326, EPI_ISL_19339782, EPI_ISL_19349596, EPI_ISL_19350756, EPI_ISL_19360060, EPI_ISL_19376355, EPI_ISL_19378761, EPI_ISL_19378819, EPI_ISL_19385490, EPI_ISL_19392885, EPI_ISL_19392936-19392937, EPI_ISL_19413078, EPI_ISL_19417513, EPI_ISL_19419102, EPI_ISL_19424131, EPI_ISL_19424135, EPI_ISL_19424161, EPI_ISL_19428294, EPI_ISL_19432918, EPI_ISL_19433738, EPI_ISL_19433783, EPI_ISL_19438815, EPI_ISL_19449027, EPI_ISL_19449370, EPI_ISL_19452858, EPI_ISL_19455390, EPI_ISL_19456753, EPI_ISL_19461065, EPI_ISL_19461072, EPI_ISL_19461088, EPI_ISL_19473176, EPI_ISL_19473347, EPI_ISL_19474355, EPI_ISL_19474375, EPI_ISL_19476188, EPI_ISL_19476605, EPI_ISL_19482575, EPI_ISL_19482750, EPI_ISL_19497800, EPI_ISL_19497819, EPI_ISL_19499437, EPI_ISL_19499727, EPI_ISL_19499734, EPI_ISL_19500166, EPI_ISL_19503237, EPI_ISL_19507865, EPI_ISL_19511800, EPI_ISL_19511808, EPI_ISL_19511832, EPI_ISL_19520701, EPI_ISL_19520886, EPI_ISL_19520916

FedeGueli commented 3 weeks ago
Screenshot 2024-11-03 alle 01 39 09

It should be Orf9b:V30A correct? @Over-There-Is

FedeGueli commented 3 weeks ago

Orf6:L61I is present as main branch

Over-There-Is commented 3 weeks ago

Orf6:L61I is present as main branch

But it's not detected in most sequences.