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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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MC.16 subbranch with Orf9b:R47H and Orf1a:P1786L(68, 11 countries) #2202

Open Over-There-Is opened 1 day ago

Over-There-Is commented 1 day ago

MC.16> C5622T(Orf1a:P1786L)> G28423A(Orf9b:R47H) Query: G2890A, C12616T, G28423A

Earliest sequence: 05-31 Valencia, Valencia, Spain EPI_ISL_19270918 Latest sequence: 10-04 Dublin, Ireland EPI_ISL_19497941 Regions detected: Spain 27, US 12, Italy 8, Germany 4, Sweden 4, Finland 3, France 3, Netherlands 3, Ireland 2, Norway 1, Poland 1

https://nextstrain.org/fetch/github.com/Over-There-Is/subtreeAuspice/raw/refs/heads/main/MC.16_R47H.json?c=country&label=id:node_7289157 image

Sequences: EPI_ISL_19255908, EPI_ISL_19268292, EPI_ISL_19270848, EPI_ISL_19270858, EPI_ISL_19270918, EPI_ISL_19270928-19270929, EPI_ISL_19270933, EPI_ISL_19293672, EPI_ISL_19299871, EPI_ISL_19300858, EPI_ISL_19300924, EPI_ISL_19310540, EPI_ISL_19312019, EPI_ISL_19317146, EPI_ISL_19328303, EPI_ISL_19333800, EPI_ISL_19342808, EPI_ISL_19343056, EPI_ISL_19350148, EPI_ISL_19361934, EPI_ISL_19374589, EPI_ISL_19374591, EPI_ISL_19375670, EPI_ISL_19375689, EPI_ISL_19378386, EPI_ISL_19379582, EPI_ISL_19380948, EPI_ISL_19394673, EPI_ISL_19405021, EPI_ISL_19406708, EPI_ISL_19407056, EPI_ISL_19410223, EPI_ISL_19412721, EPI_ISL_19412723, EPI_ISL_19412848-19412849, EPI_ISL_19413404, EPI_ISL_19416863, EPI_ISL_19424921, EPI_ISL_19427595, EPI_ISL_19427614, EPI_ISL_19434667, EPI_ISL_19434709, EPI_ISL_19434712, EPI_ISL_19437890, EPI_ISL_19437899, EPI_ISL_19440732, EPI_ISL_19449514, EPI_ISL_19456940, EPI_ISL_19458742, EPI_ISL_19462584, EPI_ISL_19462847, EPI_ISL_19462856, EPI_ISL_19464194, EPI_ISL_19464762, EPI_ISL_19471468, EPI_ISL_19471473, EPI_ISL_19477412, EPI_ISL_19479330, EPI_ISL_19484031, EPI_ISL_19491137, EPI_ISL_19497940-19497941, EPI_ISL_19517620, EPI_ISL_19518174, EPI_ISL_19518197, EPI_ISL_19518228

FedeGueli commented 1 day ago

Orf9b:R47H is convergent with MC.10.1, This has likely already slowed down but it was interesting