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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Mini saltation JN.1.4 with S:N30K, V47I, R346T and Orf9b:L64P, (4, Hong Kong) #2204

Closed FedeGueli closed 2 weeks ago

FedeGueli commented 2 weeks ago

JN.1.4 >> ORF1a :A4285V (C13119T) > ORF1a:P1786L (C5622T=PLPRO_P223L) > C5365T > ORF1a:A2529V (C7851T), T10636C, ORF1b:L137F (C13876T), S:N30K (T21652A),S:V47I (G21701A),S:R346T (G22599C) ORF9b:L64P (T28474C)

Query : C5365T,C7851T, T10636C Samples: 4 all from Hong Kong First collected on September 20

Tree:

Screenshot 2024-11-06 alle 14 47 52

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice6_genome_test_830a_b50ad0.json?label=id:node_7102718

xz-keg commented 2 weeks ago

just realized this is a duplicate of #2178.

FedeGueli commented 2 weeks ago

just realized this is a duplicate of #2178.

Same here! added the query from it in the issue by @ryhisner