sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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MC.1 subbranch with S:V16F(67, Canada, 2 provinces) #2242

Open Over-There-Is opened 5 days ago

Over-There-Is commented 5 days ago

MC.1> C9857T> C589T> C22480T> G21608T(S:V16F) [Typo edited] Query: C589T, C9857T, G21608T Query for dropout sequences: C589T,C9857T,C10125T, -G21608T

Earliest sequence: 09-16 Manitoba, Canada EPI_ISL_19531094 Latest sequence: 11-11 Ontario, Canada EPI_ISL_19551737 Regions detected: Canada 62(Ontario 60, Manitoba 2) Although this lineage did not spread out of Canada, it should be focused since having a mutation next to an insertion.

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_f52d_f8e4c0.json?label=id:node_7293076 image

Sequences: EPI_ISL_19457479, EPI_ISL_19457481, EPI_ISL_19457678-19457683, EPI_ISL_19457782, EPI_ISL_19457898-19457900, EPI_ISL_19470375, EPI_ISL_19470784, EPI_ISL_19482808, EPI_ISL_19483052-19483053, EPI_ISL_19494690, EPI_ISL_19514649, EPI_ISL_19514654, EPI_ISL_19514790, EPI_ISL_19514881, EPI_ISL_19515430, EPI_ISL_19515445-19515447, EPI_ISL_19524017, EPI_ISL_19531094, EPI_ISL_19531109, EPI_ISL_19537845, EPI_ISL_19538033, EPI_ISL_19538289, EPI_ISL_19538473, EPI_ISL_19538827, EPI_ISL_19551403, EPI_ISL_19551406-19551410, EPI_ISL_19551412-19551416, EPI_ISL_19551420-19551427, EPI_ISL_19551429-19551434, EPI_ISL_19551737, EPI_ISL_19551833, EPI_ISL_19552950

FedeGueli commented 4 days ago

Should it be S:V16F right? or the F>V proposed here is in the insertion?

FedeGueli commented 4 days ago

i think it is a typo, correcting it.

Over-There-Is commented 4 days ago

i think it is a typo, correcting it.

Thank you