FL.1.3 with S:T478T emerged in Philippines (51 seqs PH., Jap, SK, US, Austria, Singapore)

[FedeGueli]

S:T478T seems another pathway the virus is exploring (see FL.22 and CM.10) especially on the immunity background of Philippines.

Defining mutations: FL.1.3 >>> Orf1a:I2873M (A8884G = NSP4_I110M) > T8737C > S:T478T (Rev: A22995C)

Tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2dde3_ee8170.json?c=gt-S_478&label=id:node_6676804

Gisaid query: A8884G ,T8737C,-C22995A,T28297C

Samples : 28 First: hCoV-19/South Korea/KDCA227531/2023 | Original | EPI_ISL_17473159 | 2023-03-26 | Last: hCoV-19/Singapore/R43MR120/2023 | Original | EPI_ISL_17837770 | 2023-06-20

IDs: EPI_ISL_17473159, EPI_ISL_17666253, EPI_ISL_17689610, EPI_ISL_17780168, EPI_ISL_17791825, EPI_ISL_17791939, EPI_ISL_17819218, EPI_ISL_17819338, EPI_ISL_17819831, EPI_ISL_17827002, EPI_ISL_17837770, EPI_ISL_17880311, EPI_ISL_17880395, EPI_ISL_17880658, EPI_ISL_17881783, EPI_ISL_17883969, EPI_ISL_17948694-17948695, EPI_ISL_17948723, EPI_ISL_17948777, EPI_ISL_17948788, EPI_ISL_17948809, EPI_ISL_17948824, EPI_ISL_17948854, EPI_ISL_17948925, EPI_ISL_17948936, EPI_ISL_17948950, EPI_ISL_17948953,

Countries: PH., Jap, SK, US, Austria, Singapore

[FedeGueli]

One more sequence from Japan

[FedeGueli]

New samples from Finland, Florida, Japan, Luxembourg. Could be faster than expected.

[FedeGueli]

It is circulating at low levels in Singapore

[FedeGueli]

California & Hawaii +2

[FedeGueli]

Hawaii and Nevada.

[FedeGueli]

Interesting but slow.