FedeGueli
commented
1 year ago Please tranfer this and its sublineage S:F157L in one issue together on pango Page. Please mention the recent 157L sublineage in the headline , (to me that is the amin proposal but right to make pango committee aware of the weird orf8 post truncation defining mutation of this branch, they will choose then if this will grow further.
Mutations on top of EU.1.1: Seemingly just Orf8:A51V Gisaid Inquiry: Spike_I410V,P521S, F486P +C28045T Sequences: EPI_ISL_17070943, EPI_ISL_17080159, EPI_ISL_17113008, EPI_ISL_17113070, EPI_ISL_17184064, EPI_ISL_17184110, EPI_ISL_17184731, EPI_ISL_17186627, EPI_ISL_17189053, EPI_ISL_17189727, EPI_ISL_17209859, EPI_ISL_17210328, EPI_ISL_17247464, EPI_ISL_17254193, EPI_ISL_17256409, EPI_ISL_17257719, EPI_ISL_17257725, EPI_ISL_17258824, EPI_ISL_17258856, EPI_ISL_17258867, EPI_ISL_17258871, EPI_ISL_17264453, EPI_ISL_17264729, EPI_ISL_17269020, EPI_ISL_17269098, EPI_ISL_17269145, EPI_ISL_17274196, EPI_ISL_17293263, EPI_ISL_17293268, EPI_ISL_17296694, EPI_ISL_17307289, EPI_ISL_17315222, EPI_ISL_17315650, EPI_ISL_17315776, EPI_ISL_17326805, EPI_ISL_17327319, EPI_ISL_17344347, EPI_ISL_17344437, EPI_ISL_17348202, EPI_ISL_17375588, EPI_ISL_17389819, EPI_ISL_17390163, EPI_ISL_17394255, EPI_ISL_17394273, EPI_ISL_17397852, EPI_ISL_17397861, EPI_ISL_17397875, EPI_ISL_17397878, EPI_ISL_17398093, EPI_ISL_17398138, EPI_ISL_17398161, EPI_ISL_17407395, EPI_ISL_17410155, EPI_ISL_17414522, EPI_ISL_17440463, EPI_ISL_17442569, EPI_ISL_17463547, EPI_ISL_17464666, EPI_ISL_17468239-17468240, EPI_ISL_17468245, EPI_ISL_17468978, EPI_ISL_17469510, EPI_ISL_17472154, EPI_ISL_17472339, EPI_ISL_17472996, EPI_ISL_17479759, EPI_ISL_17479773, EPI_ISL_17479789, EPI_ISL_17479796, EPI_ISL_17486216, EPI_ISL_17495725, EPI_ISL_17500222, EPI_ISL_17500231, EPI_ISL_17510436, EPI_ISL_17513880, EPI_ISL_17513897, EPI_ISL_17513979, EPI_ISL_17514036, EPI_ISL_17514081, EPI_ISL_17515603, EPI_ISL_17515723, EPI_ISL_17515785, EPI_ISL_17518756, EPI_ISL_17519958, EPI_ISL_17521277, EPI_ISL_17525535, EPI_ISL_17525546, EPI_ISL_17525566, EPI_ISL_17525597, EPI_ISL_17528546, EPI_ISL_17528548, EPI_ISL_17534789, EPI_ISL_17538356, EPI_ISL_17540658, EPI_ISL_17541356, EPI_ISL_17547763, EPI_ISL_17547794, EPI_ISL_17547873, EPI_ISL_17553208, EPI_ISL_17554952, EPI_ISL_17556024, EPI_ISL_17562745-17562746, EPI_ISL_17562758, EPI_ISL_17566113, EPI_ISL_17590797, EPI_ISL_17598039, EPI_ISL_17598106, EPI_ISL_17598246, EPI_ISL_17607643, EPI_ISL_17615685, EPI_ISL_17621307, EPI_ISL_17621537, EPI_ISL_17621620, EPI_ISL_17623544, EPI_ISL_17625217, EPI_ISL_17625495, EPI_ISL_17629574, EPI_ISL_17634144-17634145, EPI_ISL_17637468-17637472, EPI_ISL_17637476, EPI_ISL_17637478-17637479, EPI_ISL_17639585, EPI_ISL_17653975, EPI_ISL_17654084, EPI_ISL_17654208, EPI_ISL_17654216-17654217, EPI_ISL_17654220, EPI_ISL_17654226, EPI_ISL_17662342, EPI_ISL_17662357, EPI_ISL_17669094, EPI_ISL_17669109, EPI_ISL_17672116, EPI_ISL_17679514, EPI_ISL_17680110, EPI_ISL_17685531, EPI_ISL_17685635, EPI_ISL_17687076-17687077, EPI_ISL_17689197, EPI_ISL_17695136, EPI_ISL_17700382, EPI_ISL_17700422, EPI_ISL_17700431, EPI_ISL_17701166, EPI_ISL_17701171, EPI_ISL_17701277, EPI_ISL_17701359-17701360, EPI_ISL_17701364, EPI_ISL_17701384-17701385, EPI_ISL_17701391, EPI_ISL_17701408-17701409, EPI_ISL_17701490-17701491, EPI_ISL_17704028, EPI_ISL_17714378, EPI_ISL_17716653, EPI_ISL_17723535, EPI_ISL_17731392, EPI_ISL_17732709, EPI_ISL_17742515, EPI_ISL_17744615, EPI_ISL_17763218, EPI_ISL_17763400, EPI_ISL_17764136, EPI_ISL_17765825, EPI_ISL_17769744, EPI_ISL_17770416, EPI_ISL_17775297, EPI_ISL_17775340, EPI_ISL_17775526, EPI_ISL_17777366, EPI_ISL_17777370-17777372, EPI_ISL_17778116, EPI_ISL_17781969, EPI_ISL_17782526, EPI_ISL_17783467, EPI_ISL_17785250, EPI_ISL_17785859, EPI_ISL_17787480, EPI_ISL_17789472, EPI_ISL_17794036, EPI_ISL_17794109, EPI_ISL_17795414, EPI_ISL_17795575-17795576, EPI_ISL_17795683, EPI_ISL_17795754-17795755, EPI_ISL_17795761, EPI_ISL_17795764, EPI_ISL_17795771, EPI_ISL_17795842, EPI_ISL_17795851, EPI_ISL_17795859, EPI_ISL_17795893, EPI_ISL_17796124, EPI_ISL_17796145, EPI_ISL_17796153, EPI_ISL_17796242, EPI_ISL_17796359, EPI_ISL_17796409, EPI_ISL_17803414, EPI_ISL_17803439, EPI_ISL_17804455, EPI_ISL_17815870, EPI_ISL_17826702, EPI_ISL_17826738, EPI_ISL_17826777, EPI_ISL_17826963, EPI_ISL_17827001, EPI_ISL_17827098, EPI_ISL_17827105, EPI_ISL_17827111, EPI_ISL_17831364, EPI_ISL_17831367, EPI_ISL_17832609, EPI_ISL_17833139, EPI_ISL_17833158, EPI_ISL_17836379, EPI_ISL_17836612, EPI_ISL_17837081, EPI_ISL_17837085, EPI_ISL_17838493, EPI_ISL_17849208-17849210, EPI_ISL_17849244-17849248, EPI_ISL_17850919, EPI_ISL_17850921, EPI_ISL_17852904, EPI_ISL_17855095, EPI_ISL_17855995, EPI_ISL_17859517, EPI_ISL_17859519, EPI_ISL_17859524, EPI_ISL_17859532, EPI_ISL_17859547, EPI_ISL_17880364, EPI_ISL_17880920, EPI_ISL_17880998, EPI_ISL_17881022, EPI_ISL_17881070, EPI_ISL_17881120, EPI_ISL_17881224, EPI_ISL_17881260, EPI_ISL_17883447, EPI_ISL_17950463, EPI_ISL_17954916, Earliest Sequence: EPI_ISL_17080159 Netherland 02-07,2023 Latest Sequence: EPI_ISL_17881224 Austria 06-21, 2023 Usher Tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_88af_363070.json?f_userOrOld=uploaded%20sample&label=id:node_2991533
Comment: This is weird because I would consider Orf8 mutations after XBB.1 gaining Orf8:G8 to be quasi-silent, yet Orf8:A51V seems to randomly appear among different variants. For example, it is spotted in #33 as part of the mutation chain. This strain seems to be the parent of my lineage B in #274 . It has shown quite significant growth compared to EU.1.1 base, and could be the reason behind EU.1.1's recent recovery in variant share.
Edited Recently a sublineage of this popped up in GERMANY: Mutations:C28045T(ORF8:A51V)+C22033A(S:157L)+C14322T on EU.1.1* Inquiry: C22033A,C28045T,C14322T Distribution: Austria,GERMANY, NORWAY,USA Sequences: 28 (Updated) EPI_ISL_17685531, EPI_ISL_17700382, EPI_ISL_17700422, EPI_ISL_17782526, EPI_ISL_17803439, EPI_ISL_17810615, EPI_ISL_17826702, EPI_ISL_17826738, EPI_ISL_17826777, EPI_ISL_17826963, EPI_ISL_17827001, EPI_ISL_17827098, EPI_ISL_17827105, EPI_ISL_17827111, EPI_ISL_17833139, EPI_ISL_17837081, EPI_ISL_17837085 Earliest: EPI_ISL_17685531 ,GERMANY, 05-02,2023 Latest: EPI_ISL_17827111 Austria 06-13,2023 Usher Individual Tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_26cf5_ca3a80.json?f_userOrOld=uploaded%20sample&label=id:node_4922117