sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XBB.1.5.17 with orf9b:P10F (909 seqs, 18 countries) #319

Closed xz-keg closed 1 year ago

xz-keg commented 1 year ago

XBB.1.5.17+orf9b:P10F(C28312T)

I think this worth designation, as it is quite large with ~1000 seqs, and has a meaningful orf9b mutation. There're also some interesting Spike mutations inside its tree.

GISAID query: C28312T,C23635T,T10204C

No. of seqs: 909(Australia, Austria, Canada, Chile, Costa Rica, UK, Finland, India, Mexico, Netherlands, New Zealand, Poland, Singapore, South Korea, China, Thailand, USA, Japan)

First: EPI_ISL_16572816, 2022-12-26, USA Latest: EPI_ISL_17859895, 2023-6-20, USA

usher

屏幕截图 2023-07-04 183656

FedeGueli commented 1 year ago

Interesting the most of this proposed lineag has Orf7b:F13L (T27794A) i looked for deletion insertion there without finding them. @ryhisner do you think that mutation could be of any relevance ? It is the exact same location of the indel bringing to the new Orf7b of XBC FR.1 and GP.1

xz-keg commented 1 year ago

Proposed