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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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Stepwise evolution of XBB.1.16 sublineage that acquired then S:T430I (10 seqs , 5 country) #402

Closed FedeGueli closed 1 year ago

FedeGueli commented 1 year ago

Defining mutations:

XBB.1.16 >> ORF1a:L450F (C1613T) > ORF1a:I3587T (T11025C = NSP6_I16T) > ORF1a:Q3777E (C11594G = NSP6_Q208E)

Orf1a:L469F (C1609T = NSP2_L289F), ORF1a:Q526K (C1670T = NSP2_Q346K) , C1841A, Orf1a:T2166I ( C6762T = NSP3_T1348I ),T25719C > A11782G, S:T430I (C22851T)

Gisaid query: T25719C , A11782G, C22851T

Samples :7 First : hCoV-19/England/BRBR-3271ACA5/2023 | Original | EPI_ISL_17785862 | 2023-05-26 Last: hCoV-19/France/GES-IPP15926/2023 | Original | EPI_ISL_17949386

Country: 4

Tree: Schermata 2023-07-12 alle 16 24 45

S:T430I is predicted to be slighty advantageous Schermata 2023-07-12 alle 16 25 58

FedeGueli commented 1 year ago

8th from Ohio

FedeGueli commented 1 year ago

Last came from Guangdong