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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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FL.35 (Orf8:S103L) +S:478R,688V saltation(6-nuc/6-aa) (14 seqs, 3 countries) #444

Closed xz-keg closed 1 year ago

xz-keg commented 1 year ago

XBB.1.9.1+ A28704G,C1758T, C23625T, C28005T, A22995G, C28201T

ORF1a | A498V S | K478R, A688V ORF8 | P38S, S103L N | D144G

usher assigns it on XBB.1.9.1+C28201T+A22995G branch, however, as both A22995G and C28201T are quite convergent, it's better treat them as part of the saltation.

GISAID query: A28704G,C1758T, C23625T No. of seqs: 5(Australia 2 USA 3(2 from South Africa, 1 airport))

First: EPI_ISL_17950386, USA from South Africa, 2023-6-21 Latest: EPI_ISL_17999798, Australia, 2023-7-6

usher

image

Edited : showing advantage over top lineages: https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?nextcladePangoLineage=EG.5.1*&nucMutations1=A28704G%2CC1758T%2CC23625T&analysisMode=CompareToBaseline&

FedeGueli commented 1 year ago

Last samples from WA and Sa Australia. Please propose it when reaches 20 (if @corneliusroemer doesnt spot it before)

FedeGueli commented 1 year ago

I think it has slowed down lets monitor here for abit more

FedeGueli commented 1 year ago

Closing this one for now.

FedeGueli commented 1 year ago

Parental lineage with Orf8:S:103L got designated FL.35 via https://github.com/cov-lineages/pango-designation/commit/3ddfc810a6a2903d70f42ff6645c412d00a9b927