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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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FL.14 + S:T478N (27 sequences - Finland, Austria, Russia ) #6

Closed FedeGueli closed 1 year ago

FedeGueli commented 1 year ago

transferred from : https://github.com/cov-lineages/pango-designation/issues/1957

While checking XBB.2.3.5 i spotted this very recent sublineage of XBB.1.9.1 that acquired S:T478N and seems spreading in FInland and has been sampled in Austria too. It belongs to a greater branch defined by the mutation S:V1122M that reoccurs here after being spotted in XBB.1.5 and in a proposed but undesignated lineage in Laos.

Defining mutations: (EDITED) [XBB.1.9.1 > C29311T > C22978T > S:V1122M (G24926A)] = FL.14 > A11794G, S:T478N (A22996C), C29095T

Tree:

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_19333_843810.json?branchLabel=nuc%20mutations&c=userOrOld&label=id:node_5856306

Gisaid query: C29311T, C22978T ,G24926A,A11794G

Sequences: 8 (7 from Finland) EPI_ISL_17398529, EPI_ISL_17528500-17528501, EPI_ISL_17540380, EPI_ISL_17540518-17540520, EPI_ISL_17540522

FedeGueli commented 1 year ago

No seqs for this. i will open a week more beofre closing it

FedeGueli commented 1 year ago

No new seqs. closing it

FedeGueli commented 1 year ago

It made it to Russia better reopen this for a while.