Closed NkRMnZr closed 1 year ago
41 as today it appears slow. If anything doesnt change it will be closed next week
new seqs from New Zealand EPI_ISL_17739840, EPI_ISL_17740066, EPI_ISL_17740181,
52 on Gisaid now with Canada, Arizona and Tennessee
Now things got a little bit complicated, if using the query above, there are 53 to catch:
from these seqs above, there are a few placed in strange areas of UShER trees:
besides, there are many more seqs that:
close it for now
Defining mutations: (On XBB.1.5.27's defining C22995G/S:T478R) > C22329T(S:S256L) Query: C22995G, C22329T, A3309G Earliest seq: 2023-01-25 (Colorado, USA, EPI_ISL_16896184) Latest seq: 2023-05-22 (Canada, EPI_ISL_17727024) Sampled in Countries: USA (52), New Zealand (3), Canada (2), Japan (1)
GISAID Genomes:
EPI_ISL_16896184, EPI_ISL_17058945, EPI_ISL_17162463, EPI_ISL_17169891, EPI_ISL_17181335, EPI_ISL_17196749, EPI_ISL_17196756, EPI_ISL_17236731, EPI_ISL_17236737, EPI_ISL_17237829, EPI_ISL_17278347, EPI_ISL_17278774, EPI_ISL_17280909, EPI_ISL_17320946, EPI_ISL_17323673, EPI_ISL_17428855, EPI_ISL_17445172, EPI_ISL_17445286, EPI_ISL_17468523, EPI_ISL_17475142, EPI_ISL_17477711, EPI_ISL_17477974, EPI_ISL_17491692, EPI_ISL_17491693, EPI_ISL_17492231, EPI_ISL_17500364, EPI_ISL_17526886, EPI_ISL_17527211, EPI_ISL_17543651, EPI_ISL_17543823, EPI_ISL_17551656, EPI_ISL_17551657, EPI_ISL_17588202, EPI_ISL_17588501, EPI_ISL_17589298, EPI_ISL_17590310, EPI_ISL_17612017, EPI_ISL_17616806, EPI_ISL_17626616, EPI_ISL_17639624, EPI_ISL_17652746, EPI_ISL_17652846, EPI_ISL_17669810, EPI_ISL_17669811, EPI_ISL_17669880, EPI_ISL_17670037, EPI_ISL_17674301, EPI_ISL_17675229, EPI_ISL_17686050, EPI_ISL_17688676, EPI_ISL_17706774, EPI_ISL_17727024, EPI_ISL_17739840, EPI_ISL_17740066, EPI_ISL_17740181, EPI_ISL_17758368, EPI_ISL_17758399, EPI_ISL_17759677GenBank Genomes:
USA/AZ00178199/2023|OQ821305.1|2023-03-26, USA/AZ00178514/2023|OQ815834.1|2023-04-05, USA/AZ00179141/2023|OQ872848.1|2023-04-17, USA/AZ00179486/2023|OQ926174.1|2023-04-23, USA/AZ-2023-0441/2023|OQ546152.1|2023-02-12, USA/AZ-2023-0609/2023|OQ597873.1|2023-03-01, USA/AZ-2023-0613/2023|OQ591762.1|2023-02-26, USA/AZ-2023-0678/2023|OQ708465.1|2023-03-05, USA/UT-IDEL-2023031636_2023/2023|OQ681113.1|2023-03-12, USA/UT-UPHL-230407446698/2023|OQ802989.1|2023-03-29, USA/UT-UPHL-230407906631/2023|OQ803167.1|2023-04-03UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_8f37_170b00.json?f_userOrOld=uploaded%20sample
Trivia: