Closed NkRMnZr closed 11 months ago
branch 1 seems quite fast. branch 2 to me is slow.
Tracking updates
G20060T, C22995G, G23222A, -A6063C, -G20944A, -C21036T, -G28375A
Branch 1 designated HN.5 via https://github.com/cov-lineages/pango-designation/commit/b16ba7454fd93bd4caf7b3ddfcc3b662c4d36cd2
branch 2 seems slow, closing it for now
Thank you
the Orf9b:S63F branch of HN.5 could be the donor of XDA : look: https://cov-spectrum.org/explore/World/AllSamples/from%3D2023-11-01%26to%3D2023-12-19/variants?nextcladePangoLineage=XDA*&nucMutations1=C28471T&nextcladePangoLineage1=HN.5*&analysisMode=CompareEquals& @corneliusroemer
the Orf9b:S63F branch of HN.5 could be the donor of XDA : look: https://cov-spectrum.org/explore/World/AllSamples/from%3D2023-11-01%26to%3D2023-12-19/variants?nextcladePangoLineage=XDA*&nucMutations1=C28471T&nextcladePangoLineage1=HN.5*&analysisMode=CompareEquals& @corneliusroemer
already shown by lineages note.
Branch 1: Designated as HN.5 via cov-lineages/pango-designation@b16ba74
Designated as HN.5
**Defining Mutations:** `FL.1.5.1` > `G23222A(S:E554K)` **Query:** `G20060T, C22995G, G23222A, -A6063C, -G20944A, -C21036T, -G28375A` **Earliest seq:** 2023-05-26 (`EPI_ISL_17964641`, Nizwá, Oman) **Latest seq:** 2023-10-02 (`EPI_ISL_18362024`, Singapore) **Sampled Countries:** Germany (9), Switzerland (6), Finland (4), UK (4: EN/3; SC), US (4: NJ/3; NY), Canada (3: ON/2; BC), Denmark (2), Ireland (2), Israel (2), Singapore (2), Costa Rica (1), France (1), Greece (1), South Korea (1), Oman (1), Sweden (1)Genomes:
`EPI_ISL_17964641, EPI_ISL_18039197, EPI_ISL_18052725, EPI_ISL_18216685, EPI_ISL_18220207, EPI_ISL_18255968, EPI_ISL_18258846, EPI_ISL_18258853, EPI_ISL_18284327, EPI_ISL_18285604, EPI_ISL_18285606, EPI_ISL_18295175, EPI_ISL_18299611, EPI_ISL_18299615, EPI_ISL_18299617, EPI_ISL_18299626, EPI_ISL_18299628, EPI_ISL_18299633, EPI_ISL_18300173, EPI_ISL_18309263, EPI_ISL_18309369, EPI_ISL_18314607, EPI_ISL_18315392, EPI_ISL_18323383, EPI_ISL_18323399, EPI_ISL_18323401, EPI_ISL_18340102, EPI_ISL_18343447, EPI_ISL_18343547, EPI_ISL_18344918, EPI_ISL_18345629, EPI_ISL_18347795, EPI_ISL_18347824, EPI_ISL_18347876, EPI_ISL_18347934, EPI_ISL_18356133, EPI_ISL_18356689, EPI_ISL_18357972, EPI_ISL_18359854, EPI_ISL_18360430, EPI_ISL_18360435, EPI_ISL_18361779, EPI_ISL_18362024, EPI_ISL_18362302`Back to Tasklist
Branch 2
Defining Mutations:
FL.1.5.1
>C703T, A6063C(ORF1a:D1933A), C18981T
>C619T, A2071G
>T25833C
>C15656T(ORF1b:T730I), G23222A(S:E554K)
Query:C619T, A6063C, G23222A
Earliest seq: 2023-08-14 (EPI_ISL_18168343
, Lisses, France) Latest seq: 2023-09-18 (EPI_ISL_18357389
, France) Sampled Countries: France (8), Japan (1)Genomes:
`EPI_ISL_18168343, EPI_ISL_18220219-18220220, EPI_ISL_18221831, EPI_ISL_18221870, EPI_ISL_18258682, EPI_ISL_18280676, EPI_ISL_18306605, EPI_ISL_18357389`UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_24e9c_3fa7e0.json?f_userOrOld=uploaded%20sample&label=id:node_3390952
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