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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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EG.5.1+S:I19L(223 seqs, 16 countries) #940

Closed xz-keg closed 1 year ago

xz-keg commented 1 year ago

There seems to be a branch on EG.5.1 with the 2-nuc mutation S:19:T->I->L, though it doesn't seem to have very large advantage. (+2% with EG.5.1 and +4% with EG.5.1 without L455F)

https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?nextcladePangoLineage=EG.5.1*&aaMutations1=S%3A19L&nextcladePangoLineage1=EG.5.1*&analysisMode=CompareToBaseline&

EG.5.1+A21617C(S:I19L)

GISAID query: A21617C,C29625T,T28297C No. of seqs: 223(Australia 3 Canada 16 Canary Islands 1 Denmark 1 UK 7 France 1 China 11 Ireland 1 Italy 13 Japan 2 Portugal 1 Puerto Rico 1 Singapore 6 South Korea 10 Spain 9 USA 139(1 from Japan 1 from Dominician Republic) Ukraine 1 )

First: EPI_ISL_18287671, USA, 2023-1-31 Latest: EPI_ISL_18361997, Singapore, 2023-10-4

usher

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FedeGueli commented 1 year ago

being already a branch with not a lot of chances to be competitive on its own but for sure relevant i think you may transfer this to the main repo tagging Cornelius, dunno if he will choose to describe better the tree or instead preferring to let things settling down during this switch to new dominant lineages